WormBase Tree Display for Gene: WBGene00006954
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WBGene00006954 | SMap | S_parent | Sequence | CHROMOSOME_V | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | wrt | ||||||
Allele (43) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (20) | |||||||
Ortholog (25) | |||||||
Paralog (24) | |||||||
Structured_description | Concise_description | wrt-8 encodes a hedgehog-like protein, with (from N- to C-terminus) asignal sequence, a Wart domain, an short region of low-complexitysequence, and a Hint/Hog domain; WRT-8 is strongly expressed inhypodermal syncytia hyp6-hyp10 throughout life, and in in 12 subventralP cells and their descendants from 3-fold embryo to L2 larva stages; theHint/Hog domain is predicted to cut WRT-8 into two halves and thencovalently link cholesterol to the C-terminus of the Wart domain; theWart domain is predicted to form a cysteine-crosslinked protein involvedin intercellular signalling, and it has subtle similarity to theN-terminal Hedge domain of HEDGEHOG proteins; WRT-8 has no obviousfunction in RNAi assays. | Paper_evidence | WBPaper00003717 | |||
WBPaper00026841 | |||||||
WBPaper00027263 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 05 Nov 2006 00:00:00 | ||||||
Automated_description | Predicted to enable peptidase activity. Predicted to be involved in cell-cell signaling; protein autoprocessing; and system development. Predicted to be located in cell surface; extracellular region; and plasma membrane. Expressed in hyp10; hyp6; hyp7 syncytium; hyp8; and hyp9. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C29F3.2 | |||||
Corresponding_CDS_history | C29F3.2:wp12 | ||||||
C29F3.2:wp63 | |||||||
Corresponding_transcript | C29F3.2.1 | ||||||
Other_sequence | Dviv_isotig16933 | ||||||
SS01151 | |||||||
SSC04002_1 | |||||||
Dviv_isotig16932 | |||||||
Associated_feature | WBsf653445 | ||||||
WBsf669773 | |||||||
WBsf1002264 | |||||||
WBsf1020997 | |||||||
WBsf235051 | |||||||
WBsf235052 | |||||||
Experimental_info | RNAi_result | WBRNAi00011331 | Inferred_automatically | RNAi_primary | |||
WBRNAi00076987 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00041461 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00027687 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr648 | ||||||
Expr1012897 | |||||||
Expr1032965 | |||||||
Expr1145490 | |||||||
Expr2018083 | |||||||
Expr2036221 | |||||||
Drives_construct | WBCnstr00012473 | ||||||
WBCnstr00034074 | |||||||
Construct_product | WBCnstr00034074 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (186) | |||||||
Interaction (73) | |||||||
WBProcess | WBbiopr:00000123 | ||||||
Map_info | Map | V | Position | 7.86062 | Error | 0.005823 | |
Positive | Positive_clone | C29F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4966 | |||||
5380 | |||||||
5413 | |||||||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | C09F3.d is wrong (typo?) and .d gene has been superceded. being changed to C29F3.2 a hedghog gene.[sdm 000904] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |