WormBase Tree Display for Gene: WBGene00006928

WBGene00006928 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: vit-4 Person_evidence: WBPerson71
      Sequence_name: F59D8.2
      Molecular_name: F59D8.2
        F59D8.2.1
        CE26817
      Other_name: F59D8.a Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        F59D8.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_F59D8.2 Accession_evidence: NDB BX284606
      Public_name: vit-4
    DB_info: Database: AceView gene XE176
        WormQTL gene WBGene00006928
        WormFlux gene WBGene00006928
        NDB locus_tag CELE_F59D8.2
        Panther gene CAEEL|WormBase=WBGene00006928|UniProtKB=P18947
          family PTHR23345
        NCBI gene 180646
        RefSeq protein NM_076211.8
        SwissProt UniProtAcc P18947
        TREEFAM TREEFAM_ID TF332911
        UniProt_GCRP UniProtAcc P18947
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vit
    Allele (36)
    Legacy_information: Structural gene for vitellogenin yp170A; adjacent to vit-3.
      [C.elegansII] NMK. Encodes vitellogenin yp170A (95% identical to VIT-5). Gene adjacent and nearly identical to vit-3. [Speith et al. 1985b; BL]
    Strain: WBStrain00032883
      WBStrain00047209
    RNASeq_FPKM (74)
    GO_annotation: 00039636
      00039637
      00039638
      00039639
      00115040
      00115041
    Ortholog (92)
    Paralog: WBGene00006925 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006926 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006927 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006930 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006929 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F59D8.2
    Corresponding_transcript: F59D8.2.1
    Other_sequence (125)
    Associated_feature: WBsf1004666
      WBsf237187
  Experimental_info: RNAi_result (42)
    Expr_pattern: Expr16163
      Expr1152928
      Expr2036139
    Drives_construct: WBCnstr00034092
    Construct_product: WBCnstr00034092
    Microarray_results (17)
    Expression_cluster (389)
    Interaction: WBInteraction000117534
      WBInteraction000122559
      WBInteraction000122563
      WBInteraction000134140
      WBInteraction000134141
      WBInteraction000135102
      WBInteraction000135629
      WBInteraction000140944
      WBInteraction000144323
      WBInteraction000152412
      WBInteraction000162411
      WBInteraction000162581
      WBInteraction000167086
      WBInteraction000167090
      WBInteraction000167273
      WBInteraction000167279
      WBInteraction000167686
      WBInteraction000167687
      WBInteraction000169795
      WBInteraction000173057
      WBInteraction000174038
      WBInteraction000504530
      WBInteraction000520118
      WBInteraction000524802
      WBInteraction000536512
      WBInteraction000539610
      WBInteraction000539657
      WBInteraction000539705
      WBInteraction000539708
      WBInteraction000539728
      WBInteraction000539732
      WBInteraction000539736
      WBInteraction000539742
      WBInteraction000542471
      WBInteraction000542587
      WBInteraction000549764
      WBInteraction000552039
      WBInteraction000552928
      WBInteraction000553838
      WBInteraction000554561
      WBInteraction000560711
      WBInteraction000560808
      WBInteraction000561776
      WBInteraction000562222
      WBInteraction000563490
      WBInteraction000564478
      WBInteraction000564670
      WBInteraction000567065
      WBInteraction000567308
      WBInteraction000567341
      WBInteraction000569498
      WBInteraction000569499
      WBInteraction000569602
      WBInteraction000570542
      WBInteraction000572352
      WBInteraction000573620
      WBInteraction000578954
      WBInteraction000580506
      WBInteraction000582823
      WBInteraction000585185
      WBInteraction000585942
  Map_info: Map: X Position: -10.0749 Error: 0.015222
    Positive: Positive_clone: F59D8 Inferred_automatically: From sequence, transcript, pseudogene data
        YOLK3-8
    Pseudo_map_position
  Reference (26)
  Remark: F56B6.a changed to overlapping F59D8.2 by J.Spieth [sdm 0103]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene