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WormBase Tree Display for Gene: WBGene00006718

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Name Class

WBGene00006718SMapS_parentSequenceC28G1
IdentityVersion2
NameCGC_nameubc-23Person_evidenceWBPerson89
Sequence_nameC28G1.1
Molecular_nameC28G1.1
C28G1.1.1
CE47376
Other_nameCELE_C28G1.1Accession_evidenceNDBBX284606
Public_nameubc-23
DB_infoDatabaseAceViewgeneXJ467
WormQTLgeneWBGene00006718
WormFluxgeneWBGene00006718
NDBlocus_tagCELE_C28G1.1
PanthergeneCAEEL|WormBase=WBGene00006718|UniProtKB=Q18288
familyPTHR23322
NCBIgene182989
RefSeqproteinNM_077097.5
TREEFAMTREEFAM_IDTF101127
TrEMBLUniProtAccQ18288
UniProt_GCRPUniProtAccQ18288
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:41WBPerson1971EventImportedInitial conversion from geneace
222 Feb 2012 10:36:39WBPerson1867EventSplit_intoWBGene00219376
Split_intoWBGene00219376
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classubc
Allele (43)
RNASeq_FPKM (74)
GO_annotation00060844
00060845
00060846
00060847
Ortholog (32)
ParalogWBGene00006717Caenorhabditis elegansFrom_analysisTreeFam
WBGene00018586Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010433Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionubc-23 encodes a predicted conjugating enzyme (UBCs/E2s) of the ubiquitin-conjugation system; expressed in larvae and adults in cells around the pharynx and in intestinal cells.Paper_evidenceWBPaper00005337
Person_evidenceWBPerson1716
Curator_confirmedWBPerson48
Date_last_updated13 Jan 2005 00:00:00
Automated_descriptionPredicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum and nucleus. Expressed in intestinal cell. Is an ortholog of human FAF1 (Fas associated factor 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC28G1.1
Corresponding_CDS_historyC28G1.1:wp133
C28G1.1:wp184
C28G1.1:wp187
Corresponding_transcriptC28G1.1.1
Associated_featureWBsf718654
WBsf1006259
WBsf1006260
WBsf1023477
WBsf1023478
WBsf236091
Experimental_infoRNAi_resultWBRNAi00011305Inferred_automaticallyRNAi_primary
WBRNAi00082816Inferred_automaticallyRNAi_primary
WBRNAi00076173Inferred_automaticallyRNAi_primary
WBRNAi00041419Inferred_automaticallyRNAi_primary
WBRNAi00094643Inferred_automaticallyRNAi_primary
Expr_patternExpr2102
Expr1022039
Expr1145449
Expr2017709
Expr2035847
Drives_constructWBCnstr00034196
Construct_productWBCnstr00034196
Microarray_resultsSMD_C28G1.1
191748_at
Aff_C28G1.1
GPL14144_C28G1.1_565-624_0.832_69_A
GPL19516_CGZ0006487
GPL21109_C28G1.1
GPL3518_CE04118
GPL8673_C28G1_1P00390
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_embryo_enriched
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_embryo_enriched
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038237:age-1_upregulated_intestine_rescue
WBPaper00038237:age-1_upregulated_neuron_rescue
WBPaper00038237:age-1_upregulated_nontransgenic
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00041071:spe-44_downregulated
WBPaper00041075:hcf-1(-)_skn-1(+)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045390:tunicamycin_upregulated
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051558:aging_regulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056330:glycine_downregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059027:neuron-synapses_depleted
WBPaper00059117:B.subtilis_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061319:pnp-1(jy90)_upregulated
WBPaper00061319:pnp-1(jy121)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:K07E1.1-Y71F9B.13_934
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065746:eat-2(ad1113)_downregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_20
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00034739:N2moreDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00045960:L1-L4-lethargus_upregulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc6390]:Cluster_B
InteractionWBInteraction000223514
WBInteraction000449665
WBInteraction000461879
Map_infoMapXPosition0.421986
PositivePositive_cloneC28G1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00005337
WBPaper00027315
WBPaper00033175
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], 02/06/10 krb.
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene