WormBase Tree Display for Gene: WBGene00006648

WBGene00006648 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: W03F9
  Identity: Version: 1
    Name: CGC_name: ttb-1
      Sequence_name: W03F9.5
      Molecular_name: W03F9.5
        W03F9.5.1
        CE27396
        W03F9.5.2
        W03F9.5.3
      Other_name: CELE_W03F9.5 Accession_evidence: NDB BX284605
      Public_name: ttb-1
    DB_info: Database: AceView gene 5A645
        WormQTL gene WBGene00006648
        WormFlux gene WBGene00006648
        NDB locus_tag CELE_W03F9.5
        Panther gene CAEEL|WormBase=WBGene00006648|UniProtKB=O16991
          family PTHR11618
        NCBI gene 178544
        RefSeq protein NM_070745.5
        SwissProt UniProtAcc O16991
        TREEFAM TREEFAM_ID TF105953
        UniProt_GCRP UniProtAcc O16991
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttb
    Allele (226)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP5008
      CEOP5006
    Ortholog (46)
    Paralog: WBGene00000271 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription preinitiation complex. Is an ortholog of human GTF2B (general transcription factor IIB). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W03F9.5
    Corresponding_transcript: W03F9.5.1
      W03F9.5.2
      W03F9.5.3
    Other_sequence (46)
    Associated_feature: WBsf646624
      WBsf661089
      WBsf981877
      WBsf999088
      WBsf999089
    Transcription_factor: WBTranscriptionFactor000245
  Experimental_info: RNAi_result: WBRNAi00079306 Inferred_automatically: RNAi_primary
      WBRNAi00079278 Inferred_automatically: RNAi_primary
      WBRNAi00077158 Inferred_automatically: RNAi_primary
      WBRNAi00079283 Inferred_automatically: RNAi_primary
      WBRNAi00054711 Inferred_automatically: RNAi_primary
      WBRNAi00079288 Inferred_automatically: RNAi_primary
      WBRNAi00079293 Inferred_automatically: RNAi_primary
      WBRNAi00079299 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013177
      Expr1032762
      Expr1158249
      Expr2017561
      Expr2035699
    Drives_construct: WBCnstr00034240
    Construct_product: WBCnstr00034240
    Microarray_results (25)
    Expression_cluster (97)
    Interaction (143)
  Map_info: Map: V Position: -20.0105 Error: 0.000113
    Positive: Positive_clone: W03F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003858
    WBPaper00004890
    WBPaper00005433
    WBPaper00005845
    WBPaper00006475
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [Walker AK, Blackwell TK]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene