WormBase Tree Display for Gene: WBGene00006648

WBGene00006648 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: W03F9
  Identity: Version: 1
    Name: CGC_name: ttb-1
      Sequence_name: W03F9.5
      Molecular_name: W03F9.5
        W03F9.5.1
        CE27396
        W03F9.5.2
        W03F9.5.3
      Other_name: CELE_W03F9.5 Accession_evidence: NDB BX284605
      Public_name: ttb-1
    DB_info: Database: AceView gene 5A645
        WormQTL gene WBGene00006648
        WormFlux gene WBGene00006648
        NDB locus_tag CELE_W03F9.5
        Panther gene CAEEL|WormBase=WBGene00006648|UniProtKB=O16991
          family PTHR11618
        NCBI gene 178544
        RefSeq protein NM_070745.5
        SwissProt UniProtAcc O16991
        TREEFAM TREEFAM_ID TF105953
        UniProt_GCRP UniProtAcc O16991
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:41 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttb
    Allele (226)
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP5008
      CEOP5006
    Ortholog: WBGene00062172 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028713 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153165 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00117680 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00104331 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00120121 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151269 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00082455 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00234136 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1516 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15753 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16488 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21998 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10548 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16216 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14328 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g16033 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3766 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g38 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00042.g2280 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_07797.g21116 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g18328 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_V.g18329 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g7597 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00417.g11066 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_01600.g21984 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05421 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_15245 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_019095 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_019097 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_019149 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05244 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20270 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40071400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g12946 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243613 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00256088 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00297480 Trichuris muris From_analysis: WormBase-Compara
      WBGene00298037 Trichuris muris From_analysis: WormBase-Compara
      WBGene00299814 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006290 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0004915 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-3544 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:4648 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:2385191 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:619735 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00000271 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription preinitiation complex. Is an ortholog of human GTF2B (general transcription factor IIB). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W03F9.5
    Corresponding_transcript: W03F9.5.1
      W03F9.5.2
      W03F9.5.3
    Other_sequence (46)
    Associated_feature: WBsf646624
      WBsf661089
      WBsf981877
      WBsf999088
      WBsf999089
    Transcription_factor: WBTranscriptionFactor000245
  Experimental_info: RNAi_result: WBRNAi00079306 Inferred_automatically: RNAi_primary
      WBRNAi00079278 Inferred_automatically: RNAi_primary
      WBRNAi00077158 Inferred_automatically: RNAi_primary
      WBRNAi00079283 Inferred_automatically: RNAi_primary
      WBRNAi00054711 Inferred_automatically: RNAi_primary
      WBRNAi00079288 Inferred_automatically: RNAi_primary
      WBRNAi00079293 Inferred_automatically: RNAi_primary
      WBRNAi00079299 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013177
      Expr1032762
      Expr1158249
      Expr2017561
      Expr2035699
    Drives_construct: WBCnstr00034240
    Construct_product: WBCnstr00034240
    Microarray_results (25)
    Expression_cluster (97)
    Interaction (143)
  Map_info: Map: V Position: -20.0105 Error: 0.000113
    Positive: Positive_clone: W03F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00003858
    WBPaper00004890
    WBPaper00005433
    WBPaper00005845
    WBPaper00006475
    WBPaper00027309
    WBPaper00029038
    WBPaper00038491
    WBPaper00055090
  Remark: Sequence connection from [Walker AK, Blackwell TK]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene