WormBase Tree Display for Gene: WBGene00006648
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| WBGene00006648 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W03F9 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ttb-1 | |||||||
| Sequence_name | W03F9.5 | ||||||||
| Molecular_name | W03F9.5 | ||||||||
| W03F9.5.1 | |||||||||
| CE27396 | |||||||||
| W03F9.5.2 | |||||||||
| W03F9.5.3 | |||||||||
| Other_name | CELE_W03F9.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ttb-1 | ||||||||
| DB_info | Database | AceView | gene | 5A645 | |||||
| WormQTL | gene | WBGene00006648 | |||||||
| WormFlux | gene | WBGene00006648 | |||||||
| NDB | locus_tag | CELE_W03F9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006648|UniProtKB=O16991 | |||||||
| family | PTHR11618 | ||||||||
| NCBI | gene | 178544 | |||||||
| RefSeq | protein | NM_070745.5 | |||||||
| SwissProt | UniProtAcc | O16991 | |||||||
| TREEFAM | TREEFAM_ID | TF105953 | |||||||
| UniProt_GCRP | UniProtAcc | O16991 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ttb | ||||||||
| Allele (226) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP5008 | ||||||||
| CEOP5006 | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00000271 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II general transcription initiation factor activity and TBP-class protein binding activity. Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription preinitiation complex. Is an ortholog of human GTF2B (general transcription factor IIB). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W03F9.5 | |||||||
| Corresponding_transcript | W03F9.5.1 | ||||||||
| W03F9.5.2 | |||||||||
| W03F9.5.3 | |||||||||
| Other_sequence | CR03710 | ||||||||
| DA04060 | |||||||||
| EX013250.1 | |||||||||
| HC05425 | |||||||||
| PPC09354_1 | |||||||||
| Tcir_isotig31285 | |||||||||
| Tcol_isotig09466 | |||||||||
| BM174373.1 | |||||||||
| HCC04951_1 | |||||||||
| Tcir_isotig03071 | |||||||||
| CJC18060_1 | |||||||||
| CRC08642_1 | |||||||||
| CRC06727_1 | |||||||||
| XI00564 | |||||||||
| JO472001.1 | |||||||||
| Hbac_isotig02918 | |||||||||
| Tcol_isotig09467 | |||||||||
| HG11338 | |||||||||
| JI460826.1 | |||||||||
| HBC28161_1 | |||||||||
| HGC00230_1 | |||||||||
| OVC08949_1 | |||||||||
| BM174707.1 | |||||||||
| Oden_isotig19889 | |||||||||
| Dviv_isotig21706 | |||||||||
| JI170664.1 | |||||||||
| Dviv_isotig21707 | |||||||||
| FE913859.1 | |||||||||
| DAC02347_1 | |||||||||
| HC01692 | |||||||||
| JI469009.1 | |||||||||
| HG02908 | |||||||||
| CR03343 | |||||||||
| BF727598.1 | |||||||||
| DA04616 | |||||||||
| JI172998.1 | |||||||||
| FG349430.1 | |||||||||
| TMC00699_1 | |||||||||
| ASC36919_1 | |||||||||
| JI211444.1 | |||||||||
| GP02080 | |||||||||
| GPC03128_1 | |||||||||
| Tcir_isotig09020 | |||||||||
| XIC02780_1 | |||||||||
| XIC01301_1 | |||||||||
| DAC01382_1 | |||||||||
| Associated_feature | WBsf646624 | ||||||||
| WBsf661089 | |||||||||
| WBsf981877 | |||||||||
| WBsf999088 | |||||||||
| WBsf999089 | |||||||||
| Transcription_factor | WBTranscriptionFactor000245 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00079306 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00079278 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077158 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00079283 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054711 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00079288 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00079293 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00079299 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013177 | ||||||||
| Expr1032762 | |||||||||
| Expr1158249 | |||||||||
| Expr2017561 | |||||||||
| Expr2035699 | |||||||||
| Drives_construct | WBCnstr00034240 | ||||||||
| Construct_product | WBCnstr00034240 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (143) | |||||||||
| Map_info | Map | V | Position | -20.0105 | Error | 0.000113 | |||
| Positive | Positive_clone | W03F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003858 | ||||||||
| WBPaper00004890 | |||||||||
| WBPaper00005433 | |||||||||
| WBPaper00005845 | |||||||||
| WBPaper00006475 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029038 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Walker AK, Blackwell TK] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
