WormBase Tree Display for Gene: WBGene00006596
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| WBGene00006596 | SMap | S_parent | Sequence | Y56A3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | top-3 | |||||||
| Sequence_name | Y56A3A.27 | ||||||||
| Molecular_name | Y56A3A.27 | ||||||||
| Y56A3A.27.1 | |||||||||
| CE28138 | |||||||||
| Other_name | TOP3 | Accession_evidence | EMBL | AF057032 | |||||
| Y56A3A | Paper_evidence | WBPaper00004118 | |||||||
| CELE_Y56A3A.27 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | top-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | top | ||||||||
| Allele (311) | |||||||||
| Possibly_affected_by | WBVar02152868 | ||||||||
| WBVar02153516 | |||||||||
| Strain | WBStrain00051674 | ||||||||
| WBStrain00051660 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Contained_in_operon | CEOP3746 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00012995 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | top-3 encodes DNA topoisomerase IIIalpha. | Paper_evidence | WBPaper00004118 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 20 Jul 2006 00:00:00 | ||||||||
| Automated_description | Enables DNA topoisomerase type I (single strand cut, ATP-independent) activity. Involved in DNA topological change. Located in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5. Is an ortholog of human TOP3A (DNA topoisomerase III alpha). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0020629 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11992) | ||||
| DOID:0111524 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11992) | ||||||
| Molecular_info | Corresponding_CDS | Y56A3A.27 | |||||||
| Corresponding_CDS_history | Y56A3A.27:wp52 | ||||||||
| Corresponding_transcript | Y56A3A.27.1 | ||||||||
| Other_sequence (27) | |||||||||
| Associated_feature | WBsf994542 | ||||||||
| WBsf994543 | |||||||||
| WBsf1016118 | |||||||||
| WBsf1016119 | |||||||||
| WBsf1016120 | |||||||||
| WBsf1016121 | |||||||||
| WBsf227619 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr983 | ||||||||
| Expr1011308 | |||||||||
| Expr1032729 | |||||||||
| Expr1161011 | |||||||||
| Expr2017459 | |||||||||
| Expr2035598 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction (66) | |||||||||
| Map_info | Map | III | Position | 13.556 | Error | 0.030041 | |||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4180 | |||||||
| 4904 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Y56A3A.Z cahnged to .27 following on from sequence annotation. [sdm 05/00] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
