WormBase Tree Display for Gene: WBGene00006549
expand all nodes | collapse all nodes | view schema
| WBGene00006549 | Evidence | Author_evidence | Woollard AS | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y59E9AR | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tbx-30 | |||||||
| Sequence_name | Y59E9AR.3 | ||||||||
| Molecular_name | Y59E9AR.3 | ||||||||
| Y59E9AR.3.1 | |||||||||
| CE25515 | |||||||||
| Other_name | CELE_Y59E9AR.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | tbx-30 | ||||||||
| DB_info | Database | AceView | gene | 4G1 | |||||
| WormQTL | gene | WBGene00006549 | |||||||
| WormFlux | gene | WBGene00006549 | |||||||
| NDB | locus_tag | CELE_Y59E9AR.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006549|UniProtKB=Q9N2K7 | |||||||
| family | PTHR11267 | ||||||||
| NCBI | gene | 190419 | |||||||
| RefSeq | protein | NM_068349.1 | |||||||
| SwissProt | UniProtAcc | Q9N2K7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N2K7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tbx | ||||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (17) | |||||||||
| Paralog (21) | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate specification and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y59E9AR.3 | |||||||
| Corresponding_transcript | Y59E9AR.3.1 | ||||||||
| Associated_feature | WBsf996460 | ||||||||
| Gene_product_binds | WBsf019142 | ||||||||
| WBsf019143 | |||||||||
| Transcription_factor | WBTranscriptionFactor000099 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00057775 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00057776 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021177 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018784 | ||||||||
| Expr1161204 | |||||||||
| Expression_cluster | WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray | ||||||||
| WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray | |||||||||
| WBPaper00050488:adult_vs_dauer_regulated_N2_20C | |||||||||
| WBPaper00055386:daf-2(e1370)_downregulated | |||||||||
| WBPaper00055971:nhl-2(ok818)_25C_upregulated | |||||||||
| WBPaper00059754:C.neoformans_H99_upregulated | |||||||||
| WBPaper00061479:hda-1(ne4752)_upregulated | |||||||||
| WBPaper00061527:sre-33-ZK1025.1_8337 | |||||||||
| WBPaper00065005:sams-3(RNAi)_downregulated | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | IV | Position | 1.5802 | Error | 0.000997 | |||
| Positive | Positive_clone | Y59E9AR | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024194 | ||||||||
| WBPaper00027252 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
