WormBase Tree Display for Gene: WBGene00006430
expand all nodes | collapse all nodes | view schema
WBGene00006430 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K02F3 | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | tag-51 | Person_evidence | WBPerson201 | |||||
Sequence_name | K02F3.1 | ||||||||
Molecular_name | K02F3.1 | ||||||||
K02F3.1.1 | |||||||||
CE31028 | |||||||||
Other_name | CELE_K02F3.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | tag-51 | ||||||||
DB_info | Database | AceView | gene | 3B473 | |||||
WormQTL | gene | WBGene00006430 | |||||||
WormFlux | gene | WBGene00006430 | |||||||
NDB | locus_tag | CELE_K02F3.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006430|UniProtKB=P46064 | |||||||
family | PTHR32122 | ||||||||
NCBI | gene | 175245 | |||||||
RefSeq | protein | NM_064876.10 | |||||||
SwissProt | UniProtAcc | P46064 | |||||||
TREEFAM | TREEFAM_ID | TF353820 | |||||||
UniProt_GCRP | UniProtAcc | P46064 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 02 Nov 2007 12:01:11 | WBPerson2970 | Event | Acquires_merge | WBGene00019325 | ||||
Name_change | Sequence_name | K02F3.1 | |||||||
Acquires_merge | WBGene00019325 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tag | ||||||||
Allele (66) | |||||||||
Strain | WBStrain00035652 | ||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP3044 | ||||||||
Ortholog (31) | |||||||||
Structured_description | Automated_description | Enriched in body wall musculature; germ line; and neurons based on RNA-seq and microarray studies. Is affected by several genes including skn-1; glp-1; and hsf-1 based on RNA-seq and microarray studies. Is affected by five chemicals including stavudine; paraquat; and Colistin based on RNA-seq and microarray studies. Is an ortholog of human TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K02F3.1 | |||||||
Corresponding_transcript | K02F3.1.1 | ||||||||
Other_sequence | CBC03398_1 | ||||||||
CR11073 | |||||||||
CRC04109_1 | |||||||||
CR11074 | |||||||||
Associated_feature | WBsf644928 | ||||||||
WBsf224407 | |||||||||
Experimental_info | RNAi_result | WBRNAi00049742 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033887 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049743 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011458 | ||||||||
Expr1032610 | |||||||||
Expr1153461 | |||||||||
Expr2017284 | |||||||||
Expr2035419 | |||||||||
Microarray_results (16) | |||||||||
Expression_cluster (77) | |||||||||
Interaction (63) | |||||||||
Map_info | Map | III | Position | -25.6959 | Error | 0.023471 | |||
Positive | Positive_clone | K02F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010459 | ||||||||
WBPaper00010644 | |||||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |