WormBase Tree Display for Gene: WBGene00006430

WBGene00006430 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: K02F3
  Identity: Version: 2
    Name: CGC_name: tag-51 Person_evidence: WBPerson201
      Sequence_name: K02F3.1
      Molecular_name: K02F3.1
        K02F3.1.1
        CE31028
      Other_name: CELE_K02F3.1 Accession_evidence: NDB BX284603
      Public_name: tag-51
    DB_info: Database: AceView gene 3B473
        WormQTL gene WBGene00006430
        WormFlux gene WBGene00006430
        NDB locus_tag CELE_K02F3.1
        Panther gene CAEEL|WormBase=WBGene00006430|UniProtKB=P46064
          family PTHR32122
        NCBI gene 175245
        RefSeq protein NM_064876.10
        SwissProt UniProtAcc P46064
        TREEFAM TREEFAM_ID TF353820
        UniProt_GCRP UniProtAcc P46064
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 02 Nov 2007 12:01:11 WBPerson2970 Event: Acquires_merge: WBGene00019325
              Name_change: Sequence_name: K02F3.1
      Acquires_merge: WBGene00019325
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tag
    Allele (66)
    Strain: WBStrain00035652
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3044
    Ortholog: WBGene00042358 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064881 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00071178 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CSP21.g2480 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4685 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12900 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g18563 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g18565 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g18566 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22578 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10732 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6780 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15379 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5176 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6837 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00453.g11014 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tag-51 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g16657 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01136.g18672 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19044 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_23776 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011921 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30332010 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6831 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00134537 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00064915 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00086058 Caenorhabditis remanei From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-041014-272 Danio rerio From_analysis: OrthoFinder
            Panther
      HGNC:11532 Homo sapiens From_analysis: OrthoFinder
            Panther
      MGI:109578 Mus musculus From_analysis: OrthoFinder
            Panther
      RGD:1305698 Rattus norvegicus From_analysis: OrthoFinder
            Panther
    Structured_description: Automated_description: Enriched in body wall musculature; germ line; and neurons based on RNA-seq and microarray studies. Is affected by several genes including skn-1; glp-1; and hsf-1 based on RNA-seq and microarray studies. Is affected by five chemicals including stavudine; paraquat; and Colistin based on RNA-seq and microarray studies. Is an ortholog of human TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K02F3.1
    Corresponding_transcript: K02F3.1.1
    Other_sequence: CBC03398_1
      CR11073
      CRC04109_1
      CR11074
    Associated_feature: WBsf644928
      WBsf224407
  Experimental_info: RNAi_result: WBRNAi00049742 Inferred_automatically: RNAi_primary
      WBRNAi00033887 Inferred_automatically: RNAi_primary
      WBRNAi00049743 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011458
      Expr1032610
      Expr1153461
      Expr2017284
      Expr2035419
    Microarray_results (16)
    Expression_cluster (77)
    Interaction (63)
  Map_info: Map: III Position: -25.6959 Error: 0.023471
    Positive: Positive_clone: K02F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010459
    WBPaper00010644
  Remark: Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene