WormBase Tree Display for Gene: WBGene00006391
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| WBGene00006391 | SMap | S_parent | Sequence | T12D8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | taf-9 | |||||||
| Sequence_name | T12D8.7 | ||||||||
| Molecular_name | T12D8.7 | ||||||||
| T12D8.7.1 | |||||||||
| CE16404 | |||||||||
| Other_name | CELE_T12D8.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | taf-9 | ||||||||
| DB_info | Database | AceView | gene | 3O715 | |||||
| WormQTL | gene | WBGene00006391 | |||||||
| WormFlux | gene | WBGene00006391 | |||||||
| NDB | locus_tag | CELE_T12D8.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006391|UniProtKB=O45784 | |||||||
| family | PTHR48068 | ||||||||
| NCBI | gene | 176798 | |||||||
| RefSeq | protein | NM_067413.4 | |||||||
| SwissProt | UniProtAcc | O45784 | |||||||
| TREEFAM | TREEFAM_ID | TF351417 | |||||||
| UniProt_GCRP | UniProtAcc | O45784 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | taf | ||||||||
| Allele (22) | |||||||||
| Strain | WBStrain00037163 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP3816 | ||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00008458 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Automated_description | Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in embryo development; positive regulation of transcription by RNA polymerase II; and regulation of mitotic cell cycle, embryonic. Located in nucleus. Is an ortholog of human TAF9 (TATA-box binding protein associated factor 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T12D8.7 | |||||||
| Corresponding_transcript | T12D8.7.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf994953 | ||||||||
| WBsf226042 | |||||||||
| Transcription_factor | WBTranscriptionFactor000206 | ||||||||
| WBTranscriptionFactor000476 | |||||||||
| Experimental_info | RNAi_result (35) | ||||||||
| Expr_pattern | Expr1016294 | ||||||||
| Expr1032588 | |||||||||
| Expr1156797 | |||||||||
| Expr2017221 | |||||||||
| Expr2035357 | |||||||||
| Drives_construct | WBCnstr00034376 | ||||||||
| Construct_product | WBCnstr00034376 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction (115) | |||||||||
| Map_info | Map | III | Position | 21.3023 | Error | 0.001742 | |||
| Positive | Positive_clone | T12D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004890 | ||||||||
| WBPaper00005725 | |||||||||
| WBPaper00006475 | |||||||||
| WBPaper00018966 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00029038 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040120 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Sequence connection updated from [Blackwell TK] | ||||||||
| This gene was previously called taf-10 [krb 020614] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
