WormBase Tree Display for Gene: WBGene00006391
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WBGene00006391 | SMap | S_parent | Sequence | T12D8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | taf-9 | |||||||
Sequence_name | T12D8.7 | ||||||||
Molecular_name | T12D8.7 | ||||||||
T12D8.7.1 | |||||||||
CE16404 | |||||||||
Other_name | CELE_T12D8.7 | Accession_evidence | NDB | BX284603 | |||||
Public_name | taf-9 | ||||||||
DB_info | Database | AceView | gene | 3O715 | |||||
WormQTL | gene | WBGene00006391 | |||||||
WormFlux | gene | WBGene00006391 | |||||||
NDB | locus_tag | CELE_T12D8.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006391|UniProtKB=O45784 | |||||||
family | PTHR48068 | ||||||||
NCBI | gene | 176798 | |||||||
RefSeq | protein | NM_067413.4 | |||||||
SwissProt | UniProtAcc | O45784 | |||||||
TREEFAM | TREEFAM_ID | TF351417 | |||||||
UniProt_GCRP | UniProtAcc | O45784 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | taf | ||||||||
Allele (22) | |||||||||
Strain | WBStrain00037163 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (13) | |||||||||
Contained_in_operon | CEOP3816 | ||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00008458 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Automated_description | Predicted to enable transcription coactivator activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in embryo development; positive regulation of transcription by RNA polymerase II; and regulation of mitotic cell cycle, embryonic. Located in nucleus. Is an ortholog of human TAF9 (TATA-box binding protein associated factor 9). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T12D8.7 | |||||||
Corresponding_transcript | T12D8.7.1 | ||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf994953 | ||||||||
WBsf226042 | |||||||||
Transcription_factor | WBTranscriptionFactor000206 | ||||||||
WBTranscriptionFactor000476 | |||||||||
Experimental_info | RNAi_result (35) | ||||||||
Expr_pattern | Expr1016294 | ||||||||
Expr1032588 | |||||||||
Expr1156797 | |||||||||
Expr2017221 | |||||||||
Expr2035357 | |||||||||
Drives_construct | WBCnstr00034376 | ||||||||
Construct_product | WBCnstr00034376 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (104) | |||||||||
Interaction (115) | |||||||||
Map_info | Map | III | Position | 21.3023 | Error | 0.001742 | |||
Positive | Positive_clone | T12D8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00004890 | ||||||||
WBPaper00005725 | |||||||||
WBPaper00006475 | |||||||||
WBPaper00018966 | |||||||||
WBPaper00027309 | |||||||||
WBPaper00029038 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00040120 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00065308 | |||||||||
Remark | Sequence connection updated from [Blackwell TK] | ||||||||
This gene was previously called taf-10 [krb 020614] | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |