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WormBase Tree Display for Gene: WBGene00006363

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Name Class

WBGene00006363EvidencePaper_evidenceWBPaper00005543
SMapS_parentSequenceF35D2
IdentityVersion1
NameCGC_namesyd-1Person_evidenceWBPerson105
WBPerson293
Sequence_nameF35D2.5
Molecular_nameF35D2.5a
F35D2.5a.1
CE33391
F35D2.5c
CE33392
F35D2.5c.1
F35D2.5c.2
Other_nameCELE_F35D2.5Accession_evidenceNDBBX284602
Public_namesyd-1
DB_infoDatabaseAceViewgene2H876
WormQTLgeneWBGene00006363
WormFluxgeneWBGene00006363
NDBlocus_tagCELE_F35D2.5
PanthergeneCAEEL|WormBase=WBGene00006363|UniProtKB=Q86NH1
familyPTHR46150
NCBIgene174230
RefSeqproteinNM_001026975.4
NM_001383891.2
SwissProtUniProtAccQ86NH1
TREEFAMTREEFAM_IDTF323458
UniProt_GCRPUniProtAccQ86NH1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsyd
Allele (120)
StrainWBStrain00032087
WBStrain00037967
WBStrain00005369
RNASeq_FPKM (74)
GO_annotation (23)
OrthologWBGene00054392Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00033849Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00159946Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00132753Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192459Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00099708Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00224095Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12723Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10704Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6875Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12254Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9204Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27498Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16823Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g662Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28534Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3436Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17142Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00080.g3680Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-syd-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold625.g6332Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00169.g6154Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09388Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006555Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13812Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g13481Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20251120Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5058Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246977Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266721Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294758Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0039883Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-121116-6Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:25841Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:25824Homo sapiensFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1918959Mus musculusFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:3036264Mus musculusFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1564206Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1305857Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00015267Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionsyd-1 encodes a protein that contains a Rho-GTPase-like activating domain as well as PDZ and C2 domains; during neuronal development, SYD-1 is required cell autonomously to positively regulate synaptogenesis; in regulating synapse development, SYD-1 functions as a positive regulator of SYD-2/liprin through direct interaction with ELKS-1, a pre-synaptic protein also required for synapse development; in turn, SYD-1 activity is regulated by RSY-1, a negative regulator of synaptogenesis, with which it also interacts physically; SYD-1 is expressed in neurons and localizes to presynaptic regions.Paper_evidenceWBPaper00005543
WBPaper00028808
Curator_confirmedWBPerson1843
Date_last_updated08 Mar 2010 00:00:00
Automated_descriptionEnables GTPase activator activity; Roundabout binding activity; and small GTPase binding activity. Involved in cell projection organization; cellular localization; and locomotion. Located in presynaptic membrane. Expressed in nerve ring and neurons. Is an ortholog of human SYDE2 (synapse defective Rho GTPase homolog 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF35D2.5a
F35D2.5c
Corresponding_CDS_historyF35D2.5:wp84
F35D2.5:wp92
F35D2.5b:wp93
F35D2.5b:wp274
Corresponding_transcriptF35D2.5a.1
F35D2.5c.1
F35D2.5c.2
Other_sequence (15)
Associated_featureWBsf650240
WBsf665701
WBsf665702
WBsf665703
WBsf665704
WBsf665705
WBsf665706
WBsf988490
WBsf988491
WBsf988492
WBsf988493
WBsf988494
WBsf988495
WBsf1012557
WBsf1012558
Experimental_infoRNAi_resultWBRNAi00082910Inferred_automaticallyRNAi_primary
WBRNAi00046330Inferred_automaticallyRNAi_primary
WBRNAi00031774Inferred_automaticallyRNAi_primary
WBRNAi00014326Inferred_automaticallyRNAi_primary
Expr_pattern (11)
Drives_constructWBCnstr00000711
WBCnstr00000728
WBCnstr00010752
WBCnstr00034391
Construct_productWBCnstr00000728
WBCnstr00007017
WBCnstr00010752
WBCnstr00010753
WBCnstr00012368
WBCnstr00012375
WBCnstr00018295
WBCnstr00021865
WBCnstr00034391
WBCnstr00038079
AntibodyWBAntibody00000569
Microarray_results (33)
Expression_cluster (201)
Interaction (51)
Map_infoMapIIPosition0.504817Error4.2e-05
PositivePositive_cloneF35D2Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4188
4715
4733
5534
Pseudo_map_position
Reference (52)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene