WormBase Tree Display for Gene: WBGene00006070
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| WBGene00006070 | SMap | S_parent | Sequence | C50C10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | str-2 | Person_evidence | WBPerson42 | |||||
| Sequence_name | C50C10.7 | ||||||||
| Molecular_name | C50C10.7 | ||||||||
| C50C10.7.1 | |||||||||
| CE28211 | |||||||||
| Other_name | CELE_C50C10.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | str-2 | ||||||||
| DB_info | Database | AceView | gene | 5K304 | |||||
| WormQTL | gene | WBGene00006070 | |||||||
| WormFlux | gene | WBGene00006070 | |||||||
| NDB | locus_tag | CELE_C50C10.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006070|UniProtKB=G5EF54 | |||||||
| family | PTHR22943 | ||||||||
| NCBI | gene | 179377 | |||||||
| RefSeq | protein | NM_171516.3 | |||||||
| TrEMBL | UniProtAcc | G5EF54 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF54 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | str | ||||||||
| Allele (30) | |||||||||
| Strain (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00017446 | ||||||||
| 00017447 | |||||||||
| 00017448 | |||||||||
| 00017449 | |||||||||
| 00017450 | |||||||||
| 00017451 | |||||||||
| 00017452 | |||||||||
| 00017453 | |||||||||
| 00017454 | |||||||||
| Ortholog (17) | |||||||||
| Paralog (269) | |||||||||
| Structured_description | Concise_description | str-2 encodes a seven-transmembrane protein that is a candidate olfactory receptor; STR-2::GFP reporter fusions are expressed in chemosensory neurons including the AWC neuron, in which STR-2 is expressed asymmetrically, in either the AWCL or AWCR neuron, but not both; asymmetric STR-2 expression in AWC is regulated by axon contact, innexins and a calcium and MAPKKK signaling pathway; STR-2 localizes to cilia; loss of str-2 function via RNAi has been reported to result in extended life span. | Paper_evidence | WBPaper00003760 | |||||
| WBPaper00004669 | |||||||||
| WBPaper00006325 | |||||||||
| WBPaper00029404 | |||||||||
| WBPaper00031175 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Feb 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable G protein-coupled olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and olfactory behavior. Located in non-motile cilium. Expressed in ASIL; ASIR; AWC-ON; AWCL; and AWCR. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50C10.7 | |||||||
| Corresponding_CDS_history | C50C10.7:wp52 | ||||||||
| Corresponding_transcript | C50C10.7.1 | ||||||||
| Other_sequence | AF216966 | ||||||||
| Associated_feature | WBsf718381 | ||||||||
| WBsf1000995 | |||||||||
| WBsf1020226 | |||||||||
| WBsf1020227 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030017 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00063716 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063715 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042869 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012193 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct (27) | |||||||||
| Construct_product | WBCnstr00034558 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (28) | |||||||||
| Interaction (178) | |||||||||
| Map_info | Map | V | Position | 2.19956 | Error | 6.1e-05 | |||
| Positive | Positive_clone | C50C10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4708 | |||||||
| 5376 | |||||||||
| 5436 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (79) | |||||||||
| Remark | Sequence connection from [Troemel ER, Dwyer HA, Bargmann CI] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
