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WormBase Tree Display for Gene: WBGene00005582

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Name Class

WBGene00005582EvidencePerson_evidenceWBPerson522
SMapS_parentSequenceY61B8B
IdentityVersion1
NameCGC_namesri-70Person_evidenceWBPerson522
Sequence_nameY61B8B.1
Molecular_nameY61B8B.1
Y61B8B.1.1
CE41288
Other_nameCELE_Y61B8B.1Accession_evidenceNDBBX284605
Public_namesri-70
DB_infoDatabaseAceViewgene5R783
WormQTLgeneWBGene00005582
WormFluxgeneWBGene00005582
NDBlocus_tagCELE_Y61B8B.1
PanthergeneCAEEL|WormBase=WBGene00005582|UniProtKB=O45967
familyPTHR45830
NCBIgene190450
RefSeqproteinNM_074979.3
TREEFAMTREEFAM_IDTF315276
TrEMBLUniProtAccO45967
UniProt_GCRPUniProtAccO45967
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:38WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsri
AlleleWBVar02122255
WBVar01499524
WBVar01499525
WBVar01500098
WBVar02124497
WBVar01086021
WBVar01086022
WBVar01086023
WBVar01086024
WBVar01086025
WBVar01086026
WBVar01086027
WBVar01086028
WBVar01086029
WBVar00483172
WBVar02137986
WBVar00483173
WBVar00483174
WBVar01499566
WBVar00483175
WBVar02122864
WBVar01498290
WBVar00091135
WBVar02122328
WBVar02122696
WBVar01498682
WBVar01636457
WBVar02121796
WBVar01499446
WBVar01498710
WBVar02123303
WBVar02121652
WBVar01498549
WBVar02121298
WBVar02124059
WBVar01499299
WBVar02124430
WBVar02123142
WBVar02124270
WBVar01498957
WBVar00091250
RNASeq_FPKM (74)
GO_annotation00035778
OrthologWBGene00191911Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00083411Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00108536Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00140372Caenorhabditis brenneriFrom_analysisWormBase-Compara
CSP32.g10708Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP40.g14567Caenorhabditis tribulationisFrom_analysisWormBase-Compara
chrV_pilon.g17420Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00124687Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00125742Caenorhabditis japonicaFrom_analysisWormBase-Compara
Paralog (292)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY61B8B.1
Corresponding_CDS_historyY61B8B.1:wp98
Y61B8B.1:wp177
Corresponding_transcriptY61B8B.1.1
Other_sequenceFG647738.1
Associated_featureWBsf1002633
WBsf1002634
WBsf1021256
WBsf233139
Experimental_infoRNAi_resultWBRNAi00057836Inferred_automaticallyRNAi_primary
WBRNAi00037667Inferred_automaticallyRNAi_primary
Expr_patternExpr1013338
Expr1161273
Expr2016569
Expr2034762
Drives_constructWBCnstr00034869
Construct_productWBCnstr00034869
Microarray_results (13)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00049377:MWCNT_downregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:lsm-1(tm3585)_downregulated_L3
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051558:aging_regulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:ugt-27-C28G1.2
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00034661:AgNPs_downregulated
WBPaper00035227:heat_shock_regulated
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
Interaction (47)
Map_infoMapVPosition12.8539Error0.00049
PositivePositive_cloneY61B8BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene