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WormBase Tree Display for Gene: WBGene00005582

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Name Class

WBGene00005582EvidencePerson_evidenceWBPerson522
SMapS_parentSequenceY61B8B
IdentityVersion1
NameCGC_namesri-70Person_evidenceWBPerson522
Sequence_nameY61B8B.1
Molecular_nameY61B8B.1
Y61B8B.1.1
CE41288
Other_nameCELE_Y61B8B.1Accession_evidenceNDBBX284605
Public_namesri-70
DB_infoDatabaseAceViewgene5R783
WormQTLgeneWBGene00005582
WormFluxgeneWBGene00005582
NDBlocus_tagCELE_Y61B8B.1
PanthergeneCAEEL|WormBase=WBGene00005582|UniProtKB=O45967
familyPTHR45830
NCBIgene190450
RefSeqproteinNM_074979.3
TREEFAMTREEFAM_IDTF315276
TrEMBLUniProtAccO45967
UniProt_GCRPUniProtAccO45967
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:38WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsri
Allele (41)
RNASeq_FPKM (74)
GO_annotation00035778
OrthologWBGene00191911Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00083411Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00108536Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00140372Caenorhabditis brenneriFrom_analysisWormBase-Compara
CSP32.g10708Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP40.g14567Caenorhabditis tribulationisFrom_analysisWormBase-Compara
chrV_pilon.g17420Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00124687Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00125742Caenorhabditis japonicaFrom_analysisWormBase-Compara
Paralog (292)
Structured_descriptionAutomated_descriptionPredicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY61B8B.1
Corresponding_CDS_historyY61B8B.1:wp98
Y61B8B.1:wp177
Corresponding_transcriptY61B8B.1.1
Other_sequenceFG647738.1
Associated_featureWBsf1002633
WBsf1002634
WBsf1021256
WBsf233139
Experimental_infoRNAi_resultWBRNAi00057836Inferred_automaticallyRNAi_primary
WBRNAi00037667Inferred_automaticallyRNAi_primary
Expr_patternExpr1013338
Expr1161273
Expr2016569
Expr2034762
Drives_constructWBCnstr00034869
Construct_productWBCnstr00034869
Microarray_results (13)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00049377:MWCNT_downregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050193:lsm-1(tm3585)_downregulated_L3
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051558:aging_regulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053888:drh-3(rrr2)_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:ugt-27-C28G1.2
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00030985:Serratia_marcesens_upregulated
WBPaper00034661:AgNPs_downregulated
WBPaper00035227:heat_shock_regulated
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00041609:hpl-1_hpl-2_upregulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-exposed_51h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
Interaction (47)
Map_infoMapVPosition12.8539Error0.00049
PositivePositive_cloneY61B8BInferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene