WormBase Tree Display for Gene: WBGene00005037
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| WBGene00005037 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F44F4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sra-11 | Person_evidence | WBPerson42 | |||||
| Sequence_name | F44F4.13 | ||||||||
| Molecular_name | F44F4.13 | ||||||||
| F44F4.13.1 | |||||||||
| CE33395 | |||||||||
| Other_name | CELE_F44F4.13 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sra-11 | ||||||||
| DB_info | Database | AceView | gene | 2L198 | |||||
| WormQTL | gene | WBGene00005037 | |||||||
| WormFlux | gene | WBGene00005037 | |||||||
| NDB | locus_tag | CELE_F44F4.13 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005037|UniProtKB=Q20411 | |||||||
| family | PTHR31357 | ||||||||
| NCBI | gene | 191782 | |||||||
| RefSeq | protein | NM_063947.2 | |||||||
| SwissProt | UniProtAcc | Q20411 | |||||||
| TREEFAM | TREEFAM_ID | TF316946 | |||||||
| UniProt_GCRP | UniProtAcc | Q20411 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sra | ||||||||
| Allele (28) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor. sra-11:GFP expressed in interneurons AIY,AVB, one pharyngeal neuron. sra-10,11,12 clustered. [Troemel et al. 1995; CX] | ||||||||
| Strain | WBStrain00031529 | ||||||||
| WBStrain00031694 | |||||||||
| WBStrain00031695 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (40) | |||||||||
| Paralog (34) | |||||||||
| Structured_description | Concise_description | sra-11 encodes an orphan, G protein-coupled seven-transmembrane receptor; SRA-11 is expressed in three classes of interneurons, AIA, AIY, and AVB throughout larval and adult stages, and analysis of sra-11 mutations indicates that sra-11 activity in AIY is essential for olfactory imprinting; sra-11 expression in AIY is positively regulated by the TTX-3 and CEH-23 homeodomain proteins, with TTX-3 required for both initiation and maintenance of expression and CEH-23 required solely for maintenance. | Paper_evidence | WBPaper00002314 | |||||
| WBPaper00002876 | |||||||||
| WBPaper00004727 | |||||||||
| WBPaper00026662 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 06 Jan 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable olfactory receptor activity. Involved in detection of chemical stimulus involved in sensory perception and olfactory learning. Predicted to be located in membrane. Expressed in VC neuron; interneuron; pharyngeal neurons; and ventral ganglion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44F4.13 | |||||||
| Corresponding_CDS_history | F44F4.13:wp95 | ||||||||
| Corresponding_transcript | F44F4.13.1 | ||||||||
| Associated_feature | WBsf989521 | ||||||||
| WBsf1013113 | |||||||||
| WBsf1013114 | |||||||||
| WBsf223858 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00047320 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032258 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014954 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (15) | |||||||||
| Drives_construct (11) | |||||||||
| Construct_product | WBCnstr00006609 | ||||||||
| WBCnstr00006610 | |||||||||
| WBCnstr00006611 | |||||||||
| WBCnstr00011034 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (51) | |||||||||
| Interaction (62) | |||||||||
| Map_info | Map | II | Position | 3.13287 | Error | 0.000161 | |||
| Positive | Positive_clone | F44F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4358 | |||||||
| 4541 | |||||||||
| 4695 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
