WormBase Tree Display for Gene: WBGene00004986
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| WBGene00004986 | SMap | S_parent | Sequence | T07C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | spp-1 | |||||||
| Sequence_name | T07C4.4 | ||||||||
| Molecular_name | T07C4.4 | ||||||||
| T07C4.4.1 | |||||||||
| CE35363 | |||||||||
| Other_name | CELE_T07C4.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | spp-1 | ||||||||
| DB_info | Database | AceView | gene | 3L444 | |||||
| WormQTL | gene | WBGene00004986 | |||||||
| WormFlux | gene | WBGene00004986 | |||||||
| NDB | locus_tag | CELE_T07C4.4 | |||||||
| NCBI | gene | 176452 | |||||||
| RefSeq | protein | NM_066889.8 | |||||||
| TREEFAM | TREEFAM_ID | TF322432 | |||||||
| TrEMBL | UniProtAcc | Q22291 | |||||||
| UniProt_GCRP | UniProtAcc | Q22291 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spp | ||||||||
| Allele | WBVar01500260 | ||||||||
| WBVar01499545 | |||||||||
| WBVar00407186 | |||||||||
| WBVar01499774 | |||||||||
| WBVar02019092 | |||||||||
| WBVar00093807 | |||||||||
| WBVar00252252 | |||||||||
| WBVar00855993 | |||||||||
| Strain | WBStrain00032729 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Contained_in_operon | CEOP3839 | ||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00004997 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | spp-1 encodes a caenopore, a saposin (B) domain-containing protein that is a member of the saposin-like protein (SAPLIP) superfamily containing mammalian NK-lysin and granulysin and the protozoan amoebapore-like proteins; SPP-1 exhibits antibacterial activity in vitro and its expression in vivo is regulated by the DAF-2/insulin receptor signaling pathway and by the presence of bacterial pathogens such as Salmonella typhimurium and Pseudomonas aeruginosa; an spp-1::gfp reporter fusion is expressed in the intestine. | Paper_evidence | WBPaper00003435 | |||||
| WBPaper00005976 | |||||||||
| WBPaper00029438 | |||||||||
| WBPaper00031463 | |||||||||
| WBPaper00032276 | |||||||||
| WBPaper00035289 | |||||||||
| WBPaper00041035 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Jul 2012 00:00:00 | ||||||||
| Automated_description | Enables pore-forming activity. Involved in defense response to other organism and pore formation in membrane of another organism. Part of pore complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07C4.4 | |||||||
| Corresponding_CDS_history | T07C4.4:wp108 | ||||||||
| Corresponding_transcript | T07C4.4.1 | ||||||||
| Other_sequence | CR10745 | ||||||||
| CBC10698_1 | |||||||||
| CRC07559_1 | |||||||||
| Associated_feature | WBsf227443 | ||||||||
| Experimental_info | RNAi_result (34) | ||||||||
| Expr_pattern | Expr4718 | ||||||||
| Expr8002 | |||||||||
| Expr1020872 | |||||||||
| Expr1032482 | |||||||||
| Expr1156337 | |||||||||
| Expr2016075 | |||||||||
| Expr2034311 | |||||||||
| Drives_construct | WBCnstr00012195 | ||||||||
| WBCnstr00035291 | |||||||||
| Construct_product | WBCnstr00012195 | ||||||||
| WBCnstr00035291 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (247) | |||||||||
| Interaction (20) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | III | Position | 2.4671 | Error | 0.002388 | |||
| Positive | Positive_clone | T07C4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (34) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
