WormBase Tree Display for Gene: WBGene00004978

WBGene00004978 SMap: S_parent: Sequence: Y47G6A
  Identity: Version: 3
    Name: CGC_name: spg-7 Person_evidence: WBPerson530
      Sequence_name: Y47G6A.10
      Molecular_name: Y47G6A.10
        Y47G6A.10.1
        CE34400
      Other_name: phi-23 Person_evidence: WBPerson2582
        let-517 Person_evidence: WBPerson533
        Y47G6A_247.g Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y47G6A.10 Accession_evidence: NDB BX284601
      Public_name: spg-7
    DB_info: Database (13)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:37 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 17 Mar 2005 13:54:35 WBPerson2970 Name_change: Other_name: phi-23
        3 05 Mar 2015 09:01:29 WBPerson2970 Event: Acquires_merge: WBGene00002708
              Name_change: Other_name: let-517
      Acquires_merge: WBGene00002708
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model: DOID:0050977 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:315)
      DOID:0050952 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:315)
      DOID:0050944 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:315)
      DOID:0080840 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:315)
  Molecular_info: Corresponding_CDS: Y47G6A.10
    Corresponding_CDS_history: Y47G6A.10:wp102
    Corresponding_transcript: Y47G6A.10.1
    Other_sequence (66)
    Associated_feature (11)
  Experimental_info: RNAi_result (117)
    Expr_pattern: Expr4061
      Expr1015221
      Expr1032476
      Expr1160254
      Expr2016053
      Expr2034288
    Regulate_expr_cluster: WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
    Microarray_results (20)
    Expression_cluster: WBPaper00005700:secreted_protein
      WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00035073:mitochondria_protein
      WBPaper00035269:cde-1_regulated
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00038213:E.coli(LF82)_72h_upregulated
      WBPaper00038289:oocyte_protein
      WBPaper00040446:insoluble_protein
      WBPaper00040965:lipid-droplet_associated_protein
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00045521:Gender_Neutral
      WBPaper00046509:lin-35(n745)_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050599:nicotine(0.01mM)_upregulated
      WBPaper00050698:DEP-1_interacting
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053599:mitosis_vs_meiosis_upregulated
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053615:SMO-1_target
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055969:electromagnetic-field_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059328:mrps-5(RNAi)_upregulated_protein
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00060006:nfyb-1(cu13)_upregulated_protein
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(et18)_upregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:pptr-1-F08D12.1
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062554:MAGU-2_interacting
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064315:mes-3(bn199)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065841:29_0
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_1
      cgc4489_group_3
      WBPaper00005124:progesterone_10-9M_regulated
      WBPaper00027758:Group_IV
      WBPaper00031003:hlh_1_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032948:FedUp
      WBPaper00033101:spr-5_regulated
      WBPaper00034661:AgNPs_downregulated
      WBPaper00040185:nhr-23(RNAi)_downregulated
      WBPaper00040426:CYD-1_CDK-4_upregulated
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042274:tbx-2(bx59)_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00045865:biofilm_downregulated_A
      WBPaper00048624:hlh-25(ok1710)_downregulated
      WBPaper00048637:lin-35(n745)_starvation_upregulated
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00057098:SiO2-nanoparticles_downregulated
      [cgc6390]:Cluster_C
    Interaction (149)
    WBProcess: WBbiopr:00000077
      WBbiopr:00000079
  Map_info: Map: I Position: -3.21963 Error: 0.03887
    Hide_under: WBGene00002709
    Positive: Positive_clone: Y47G6A Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Negative: Outside_rearr: hDf24
    Mapping_data: Multi_point: 5016
      Pos_neg_data: 8616
        8617
        8618
        8619
    Pseudo_map_position
  Reference (41)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene