WormBase Tree Display for Gene: WBGene00004973
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| WBGene00004973 | SMap | S_parent | Sequence | C06E7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | spe-27 | Person_evidence | WBPerson252 | |||||
| Sequence_name | C06E7.6 | ||||||||
| Molecular_name | C06E7.6 | ||||||||
| C06E7.6.1 | |||||||||
| CE03962 | |||||||||
| Other_name | CELE_C06E7.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | spe-27 | ||||||||
| DB_info | Database | AceView | gene | 4G630 | |||||
| WormQTL | gene | WBGene00004973 | |||||||
| WormFlux | gene | WBGene00004973 | |||||||
| NDB | locus_tag | CELE_C06E7.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004973|UniProtKB=P54218 | |||||||
| family | PTHR34493 | ||||||||
| NCBI | gene | 177357 | |||||||
| RefSeq | protein | NM_068474.7 | |||||||
| SwissProt | UniProtAcc | P54218 | |||||||
| TREEFAM | TREEFAM_ID | TF343123 | |||||||
| UniProt_GCRP | UniProtAcc | P54218 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spe | ||||||||
| Allele (16) | |||||||||
| Legacy_information | [C.elegansII] it132 : ts, hermaphrodites produce nonfunctionalsperm, males are fertile. Hypomorphic allele.OA>3: some alleles probably null. Cloned: transcript only in spermatogenic germ line, encodes novel predicted protein. [BA] | ||||||||
| Strain (11) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00048253 | ||||||||
| 00048254 | |||||||||
| 00048255 | |||||||||
| Ortholog (15) | |||||||||
| Paralog | WBGene00189995 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00011548 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013573 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00044391 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00044024 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00011508 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020983 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00015679 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | spe-27 encodes a novel, hydrophilic protein; spe-27 is required for hermaphrodite spermatogenesis or sperm activation but not for male-derived sperm activation (sperm activation is the morphogenesis of a round non-motile spermatid to an amoeboid crawling sperm); however, mutant hermaphrodite spe-27 spermatids can transactivate and form functional sperm during mating with males; genetic and phenotypic evidence suggests that spe-27 acts in a common pathway with spe-8, spe-12, spe-19 and spe-29. | Paper_evidence | WBPaper00002446 | |||||
| WBPaper00004444 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 26 Jul 2010 00:00:00 | ||||||||
| Automated_description | Involved in spermatid development. Expressed in sperm; spermatocyte; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C06E7.6 | |||||||
| Corresponding_transcript | C06E7.6.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00039916 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010324 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027822 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1561 | ||||||||
| Expr1562 | |||||||||
| Expr1023781 | |||||||||
| Expr1143995 | |||||||||
| Expr2016037 | |||||||||
| Expr2034271 | |||||||||
| Drives_construct | WBCnstr00035298 | ||||||||
| Construct_product | WBCnstr00035298 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (49) | |||||||||
| WBProcess | WBbiopr:00000069 | ||||||||
| Map_info | Map | IV | Position | 2.435 | Error | 0.000957 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C06E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| DC12 | |||||||||
| Mapping_data | 2_point | 7049 | |||||||
| 7050 | |||||||||
| Multi_point | 4783 | ||||||||
| Pos_neg_data | 8919 | ||||||||
| 8920 | |||||||||
| 8921 | |||||||||
| 8922 | |||||||||
| 9076 | |||||||||
| Reference (44) | |||||||||
| Method | Gene |
