WormBase Tree Display for Gene: WBGene00004811
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WBGene00004811 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F47H4 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-5 | Person_evidence | WBPerson322 | |||||
Sequence_name | F47H4.10 | ||||||||
Molecular_name | F47H4.10 | ||||||||
F47H4.10.1 | |||||||||
CE20827 | |||||||||
Other_name | CELE_F47H4.10 | Accession_evidence | NDB | BX284605 | |||||
Public_name | skr-5 | ||||||||
DB_info | Database | AceView | gene | 5R829 | |||||
WormQTL | gene | WBGene00004811 | |||||||
WormFlux | gene | WBGene00004811 | |||||||
NDB | locus_tag | CELE_F47H4.10 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004811|UniProtKB=Q9XU27 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 180148 | |||||||
RefSeq | protein | NM_074992.8 | |||||||
TREEFAM | TREEFAM_ID | TF354233 | |||||||
TrEMBL | UniProtAcc | Q9XU27 | |||||||
UniProt_GCRP | UniProtAcc | Q9XU27 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (81) | |||||||||
Strain | WBStrain00037327 | ||||||||
WBStrain00032945 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00101456 | ||||||||
00101457 | |||||||||
00101458 | |||||||||
00101459 | |||||||||
00101460 | |||||||||
00101461 | |||||||||
00113218 | |||||||||
Ortholog (60) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | The skr-5 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-5(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Involved in determination of adult lifespan. Predicted to be located in cytoplasm and nucleus. Expressed in hypodermis; intestinal cell; and vulval muscle. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F47H4.10 | |||||||
Corresponding_transcript | F47H4.10.1 | ||||||||
Other_sequence | DI02100 | ||||||||
Experimental_info | RNAi_result (14) | ||||||||
Expr_pattern | Expr9354 | ||||||||
Expr12090 | |||||||||
Expr14989 | |||||||||
Expr1015927 | |||||||||
Expr1151537 | |||||||||
Expr2015853 | |||||||||
Expr2034086 | |||||||||
Drives_construct | WBCnstr00008990 | ||||||||
WBCnstr00013919 | |||||||||
WBCnstr00020216 | |||||||||
WBCnstr00035372 | |||||||||
WBCnstr00041836 | |||||||||
Construct_product | WBCnstr00020216 | ||||||||
WBCnstr00035372 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (258) | |||||||||
Interaction (25) | |||||||||
Map_info | Map | V | Position | 12.8833 | Error | 0.001418 | |||
Positive | Positive_clone | F47H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |