WormBase Tree Display for CDS: F47H4.10
expand all nodes | collapse all nodes | view schema
F47H4.10 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F47H4 | |||
Structure | Source_exons | 1 | 57 | |||
109 | 357 | |||||
510 | 641 | |||||
DB_info | Database | TrEMBL | UniProtAcc | Q9XU27 | ||
UniProt | UniProtAcc | Q9XU27 | ||||
UniProt_GCRP | UniProtAcc | Q9XU27 | ||||
AlphaFold | entry | Q9XU27 | ||||
NCBI_protein | GI_number | GI:3877338 | ||||
TREEFAM | TREEFAM_ID | TF354233 | ||||
Protein_id | CHROMOSOME_V | CAB07209 | 1 | |||
DB_remark | SKR-5 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00004811 | ||||
Corresponding_transcript | F47H4.10.1 | |||||
Corresponding_protein | CE20827 | |||||
Corresponding_PCR_product | cenix:184-d12 | |||||
mv_F47H4.10 | ||||||
sjj_F47H4.10 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (18) | ||||||
RNAi_result (14) | ||||||
Microarray_results (17) | ||||||
Brief_identification | Skp1-related protein | Accession_evidence | UniProt | TR:Q9XU27 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |