WormBase Tree Display for Gene: WBGene00004811
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| WBGene00004811 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F47H4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | skr-5 | Person_evidence | WBPerson322 | |||||
| Sequence_name | F47H4.10 | ||||||||
| Molecular_name | F47H4.10 | ||||||||
| F47H4.10.1 | |||||||||
| CE20827 | |||||||||
| Other_name | CELE_F47H4.10 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | skr-5 | ||||||||
| DB_info | Database | AceView | gene | 5R829 | |||||
| WormQTL | gene | WBGene00004811 | |||||||
| WormFlux | gene | WBGene00004811 | |||||||
| NDB | locus_tag | CELE_F47H4.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004811|UniProtKB=Q9XU27 | |||||||
| family | PTHR11165 | ||||||||
| NCBI | gene | 180148 | |||||||
| RefSeq | protein | NM_074992.8 | |||||||
| TREEFAM | TREEFAM_ID | TF354233 | |||||||
| TrEMBL | UniProtAcc | Q9XU27 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XU27 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| Allele | WBVar01086349 | ||||||||
| WBVar02122255 | |||||||||
| WBVar01086350 | |||||||||
| WBVar01086351 | |||||||||
| WBVar01086352 | |||||||||
| WBVar01086353 | |||||||||
| WBVar01086354 | |||||||||
| WBVar01086355 | |||||||||
| WBVar01086356 | |||||||||
| WBVar01086357 | |||||||||
| WBVar01499524 | |||||||||
| WBVar01499525 | |||||||||
| WBVar01595193 | |||||||||
| WBVar01595194 | |||||||||
| WBVar01595195 | |||||||||
| WBVar01595196 | |||||||||
| WBVar01595197 | |||||||||
| WBVar01595198 | |||||||||
| WBVar01595199 | |||||||||
| WBVar01595200 | |||||||||
| WBVar01595201 | |||||||||
| WBVar01595202 | |||||||||
| WBVar01595203 | |||||||||
| WBVar01595204 | |||||||||
| WBVar01595205 | |||||||||
| WBVar02124497 | |||||||||
| WBVar01595206 | |||||||||
| WBVar01595207 | |||||||||
| WBVar01595208 | |||||||||
| WBVar01811627 | |||||||||
| WBVar01595209 | |||||||||
| WBVar01595210 | |||||||||
| WBVar01811628 | |||||||||
| WBVar01595211 | |||||||||
| WBVar01811629 | |||||||||
| WBVar01595212 | |||||||||
| WBVar01811630 | |||||||||
| WBVar01595213 | |||||||||
| WBVar01811631 | |||||||||
| WBVar01811632 | |||||||||
| WBVar01595214 | |||||||||
| WBVar01811633 | |||||||||
| WBVar01499566 | |||||||||
| WBVar02110897 | |||||||||
| WBVar02110898 | |||||||||
| WBVar02110899 | |||||||||
| WBVar02122864 | |||||||||
| WBVar01499945 | |||||||||
| WBVar01499946 | |||||||||
| WBVar01498290 | |||||||||
| WBVar00091135 | |||||||||
| WBVar02122328 | |||||||||
| WBVar01498682 | |||||||||
| WBVar02121796 | |||||||||
| WBVar00047475 | |||||||||
| WBVar00047480 | |||||||||
| WBVar00047485 | |||||||||
| WBVar00094149 | |||||||||
| WBVar01499446 | |||||||||
| WBVar01498710 | |||||||||
| WBVar02096421 | |||||||||
| WBVar02044004 | |||||||||
| WBVar02044005 | |||||||||
| WBVar02123303 | |||||||||
| WBVar01498549 | |||||||||
| WBVar00483266 | |||||||||
| WBVar00483267 | |||||||||
| WBVar00483268 | |||||||||
| WBVar02121298 | |||||||||
| WBVar02124059 | |||||||||
| WBVar01498746 | |||||||||
| WBVar01499299 | |||||||||
| WBVar02124430 | |||||||||
| WBVar02123142 | |||||||||
| WBVar01781464 | |||||||||
| WBVar01781465 | |||||||||
| WBVar01781466 | |||||||||
| WBVar02124270 | |||||||||
| WBVar01800899 | |||||||||
| WBVar01498957 | |||||||||
| WBVar00091250 | |||||||||
| Strain | WBStrain00037327 | ||||||||
| WBStrain00032945 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101456 | ||||||||
| 00101457 | |||||||||
| 00101458 | |||||||||
| 00101459 | |||||||||
| 00101460 | |||||||||
| 00101461 | |||||||||
| 00113218 | |||||||||
| Ortholog (60) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | The skr-5 gene encodes a homolog of Skp1 in S. cerevisiae that has no known function in vivo, since skr-5(RNAi) animals are at least superficially normal. | Paper_evidence | WBPaper00005128 | |||||
| WBPaper00005129 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cullin family protein binding activity. Involved in determination of adult lifespan. Predicted to be located in cytoplasm and nucleus. Expressed in hypodermis; intestinal cell; and vulval muscle. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47H4.10 | |||||||
| Corresponding_transcript | F47H4.10.1 | ||||||||
| Other_sequence | DI02100 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr9354 | ||||||||
| Expr12090 | |||||||||
| Expr14989 | |||||||||
| Expr1015927 | |||||||||
| Expr1151537 | |||||||||
| Expr2015853 | |||||||||
| Expr2034086 | |||||||||
| Drives_construct | WBCnstr00008990 | ||||||||
| WBCnstr00013919 | |||||||||
| WBCnstr00020216 | |||||||||
| WBCnstr00035372 | |||||||||
| WBCnstr00041836 | |||||||||
| Construct_product | WBCnstr00020216 | ||||||||
| WBCnstr00035372 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (258) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | V | Position | 12.8833 | Error | 0.001418 | |||
| Positive | Positive_clone | F47H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
