WormBase Tree Display for Gene: WBGene00004809
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| WBGene00004809 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F44G3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | skr-3 | Person_evidence | WBPerson322 | |||||
| Sequence_name | F44G3.6 | ||||||||
| Molecular_name | F44G3.6 | ||||||||
| F44G3.6.1 | |||||||||
| CE16037 | |||||||||
| F44G3.6.2 | |||||||||
| Other_name | CELE_F44G3.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | skr-3 | ||||||||
| DB_info | Database | AceView | gene | 5Q603 | |||||
| WormQTL | gene | WBGene00004809 | |||||||
| WormFlux | gene | WBGene00004809 | |||||||
| NDB | locus_tag | CELE_F44G3.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004809|UniProtKB=G5EE67 | |||||||
| family | PTHR11165 | ||||||||
| NCBI | gene | 180081 | |||||||
| RefSeq | protein | NM_074658.7 | |||||||
| TREEFAM | TREEFAM_ID | TF354233 | |||||||
| TrEMBL | UniProtAcc | G5EE67 | |||||||
| UniProt_GCRP | UniProtAcc | G5EE67 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00031385 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00015495 | ||||||||
| 00015496 | |||||||||
| 00015497 | |||||||||
| 00015498 | |||||||||
| 00015499 | |||||||||
| 00015500 | |||||||||
| 00015501 | |||||||||
| 00015502 | |||||||||
| 00113216 | |||||||||
| Ortholog (60) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | skr-3 encodes a homolog of Skp1 in S. cerevisiae; skr-3 transcripts are upregulated in response to pathogenic bacteria, and skr-3(RNAi) results in enhanced susceptibility to infection. | Paper_evidence | WBPaper00005128 | |||||
| WBPaper00005129 | |||||||||
| WBPaper00028482 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 12 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable cullin family protein binding activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in cytoplasm and nucleus. Expressed in intestine and pharynx. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F44G3.6 | |||||||
| Corresponding_transcript | F44G3.6.1 | ||||||||
| F44G3.6.2 | |||||||||
| Other_sequence | AF440507 | ||||||||
| Associated_feature | WBsf1002400 | ||||||||
| WBsf1021100 | |||||||||
| WBsf233078 | |||||||||
| WBsf233079 | |||||||||
| Experimental_info | RNAi_result (23) | ||||||||
| Expr_pattern | Expr2439 | ||||||||
| Expr1027783 | |||||||||
| Expr1032388 | |||||||||
| Expr1151186 | |||||||||
| Expr2015851 | |||||||||
| Expr2034084 | |||||||||
| Drives_construct | WBCnstr00010829 | ||||||||
| WBCnstr00035373 | |||||||||
| Construct_product | WBCnstr00010829 | ||||||||
| WBCnstr00035373 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (266) | |||||||||
| Interaction | WBInteraction000134103 | ||||||||
| WBInteraction000135605 | |||||||||
| WBInteraction000135606 | |||||||||
| WBInteraction000139074 | |||||||||
| WBInteraction000177651 | |||||||||
| WBInteraction000197612 | |||||||||
| WBInteraction000208854 | |||||||||
| WBInteraction000211804 | |||||||||
| WBInteraction000229745 | |||||||||
| WBInteraction000293648 | |||||||||
| WBInteraction000318492 | |||||||||
| WBInteraction000322629 | |||||||||
| WBInteraction000340875 | |||||||||
| WBInteraction000410442 | |||||||||
| WBInteraction000433199 | |||||||||
| WBInteraction000465664 | |||||||||
| WBInteraction000503367 | |||||||||
| WBInteraction000542659 | |||||||||
| WBInteraction000543612 | |||||||||
| WBInteraction000549964 | |||||||||
| WBInteraction000549968 | |||||||||
| WBInteraction000549971 | |||||||||
| WBInteraction000549989 | |||||||||
| WBInteraction000549990 | |||||||||
| WBInteraction000549991 | |||||||||
| WBInteraction000549992 | |||||||||
| WBInteraction000549993 | |||||||||
| WBInteraction000549994 | |||||||||
| WBInteraction000549995 | |||||||||
| WBInteraction000549996 | |||||||||
| WBInteraction000549997 | |||||||||
| WBInteraction000550234 | |||||||||
| WBInteraction000556726 | |||||||||
| WBInteraction000558536 | |||||||||
| WBInteraction000567022 | |||||||||
| WBInteraction000571956 | |||||||||
| WBInteraction000576505 | |||||||||
| WBInteraction000580393 | |||||||||
| WBInteraction000583599 | |||||||||
| WBInteraction000583602 | |||||||||
| WBInteraction000585105 | |||||||||
| WBInteraction000586380 | |||||||||
| Map_info | Map | V | Position | 9.60545 | Error | 0.031822 | |||
| Positive | Positive_clone | F44G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4529 | |||||||
| 4662 | |||||||||
| 5313 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
