WormBase Tree Display for Gene: WBGene00004806
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| WBGene00004806 | SMap | S_parent | Sequence | T27F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | skp-1 | Person_evidence | WBPerson344 | |||||
| Sequence_name | T27F2.1 | ||||||||
| Molecular_name | T27F2.1 | ||||||||
| T27F2.1.1 | |||||||||
| CE06519 | |||||||||
| Other_name | CELE_T27F2.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | skp-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skp | ||||||||
| Allele (70) | |||||||||
| Strain | WBStrain00032959 | ||||||||
| WBStrain00037077 | |||||||||
| WBStrain00037471 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP5296 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | skp-1 encodes the C. elegans ortholog of the SKI-binding protein (SKIP); skp-1 is predicted to function as a transcriptional cofactor and its activity is essential for embryogenesis and molting; skp-1 is also required for normal expression of several embryonic genes, as assayed by gfp reporter fusions; SKP-1 is widely expressed from embryogenesis through adulthood. | Paper_evidence | WBPaper00005345 | |||||
| WBPaper00026763 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Mar 2007 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including molting cycle; reproductive process; and vulval development. Predicted to be part of spliceosomal complex. Expressed in egg-laying apparatus; hypodermis; pharynx; rectal muscle; and somatic nervous system. Human ortholog(s) of this gene implicated in breast carcinoma; hepatocellular carcinoma; and pancreatic cancer. Is an ortholog of human SNW1 (SNW domain containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16696) | ||||
| DOID:3459 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16696) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16696) | ||||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16696) | ||||||
| Molecular_info | Corresponding_CDS | T27F2.1 | |||||||
| Corresponding_transcript | T27F2.1.1 | ||||||||
| Other_sequence (44) | |||||||||
| Associated_feature | WBsf661754 | ||||||||
| WBsf232533 | |||||||||
| WBsf232534 | |||||||||
| WBsf232535 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr1923 | ||||||||
| Expr1924 | |||||||||
| Expr1025947 | |||||||||
| Expr1032385 | |||||||||
| Expr1157880 | |||||||||
| Expr2015833 | |||||||||
| Expr2034066 | |||||||||
| Drives_construct | WBCnstr00010522 | ||||||||
| WBCnstr00035376 | |||||||||
| Construct_product | WBCnstr00035376 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (193) | |||||||||
| Map_info | Map | V | Position | 3.232 | Error | 0.001092 | |||
| Positive | Positive_clone | T27F2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Gene name created based on Pubmed 12084813 [krb 020719] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
