WormBase Tree Display for Gene: WBGene00004773
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| WBGene00004773 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sem-4 | Person_evidence | WBPerson268 | |||||
| Sequence_name | F15C11.1 | ||||||||
| Molecular_name | F15C11.1 | ||||||||
| F15C11.1.1 | |||||||||
| CE17673 | |||||||||
| Other_name | CELE_F15C11.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sem-4 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sem | ||||||||
| Allele | WBVar00145414 | Inferred_automatically | From strain object: EW35 | ||||||
| WBVar00090315 | Inferred_automatically | From strain object: MT5825 | |||||||
| From strain object: MT5884 | |||||||||
| WBVar00088334 | |||||||||
| WBVar00090147 | |||||||||
| WBVar00090155 | |||||||||
| WBVar00242574 | |||||||||
| WBVar01622872 | |||||||||
| WBVar00647324 | |||||||||
| WBVar00647325 | |||||||||
| WBVar00647326 | |||||||||
| WBVar00647327 | |||||||||
| WBVar00647328 | |||||||||
| WBVar00647329 | |||||||||
| WBVar00647330 | |||||||||
| WBVar00647331 | |||||||||
| WBVar00647332 | |||||||||
| WBVar00647333 | |||||||||
| WBVar00647334 | |||||||||
| WBVar00647335 | |||||||||
| WBVar00647336 | |||||||||
| WBVar00337419 | |||||||||
| WBVar00647337 | |||||||||
| WBVar00337420 | |||||||||
| WBVar00647338 | |||||||||
| WBVar00337421 | |||||||||
| WBVar00337422 | |||||||||
| WBVar00647339 | |||||||||
| WBVar00647340 | |||||||||
| WBVar00337423 | |||||||||
| WBVar00647341 | |||||||||
| WBVar00337424 | |||||||||
| WBVar00337425 | |||||||||
| WBVar02124860 | |||||||||
| WBVar00647342 | |||||||||
| WBVar00337426 | |||||||||
| WBVar00647343 | |||||||||
| WBVar00337427 | |||||||||
| WBVar00647344 | |||||||||
| WBVar00337428 | |||||||||
| WBVar00647345 | |||||||||
| WBVar00647346 | |||||||||
| WBVar00337429 | |||||||||
| WBVar00337430 | |||||||||
| WBVar00647347 | |||||||||
| WBVar00647348 | |||||||||
| WBVar00337431 | |||||||||
| WBVar00337432 | |||||||||
| WBVar00647349 | |||||||||
| WBVar00647350 | |||||||||
| WBVar00337433 | |||||||||
| WBVar00337434 | |||||||||
| WBVar00647351 | |||||||||
| WBVar00337435 | |||||||||
| WBVar00647352 | |||||||||
| WBVar00337436 | |||||||||
| WBVar00647353 | |||||||||
| WBVar00647354 | |||||||||
| WBVar00337437 | |||||||||
| WBVar00647355 | |||||||||
| WBVar00337438 | |||||||||
| WBVar00647356 | |||||||||
| WBVar00337439 | |||||||||
| WBVar00337440 | |||||||||
| WBVar00647357 | |||||||||
| WBVar02148528 | |||||||||
| WBVar00647358 | |||||||||
| WBVar02148529 | |||||||||
| WBVar00647359 | |||||||||
| WBVar00647360 | |||||||||
| WBVar00647361 | |||||||||
| WBVar00647362 | |||||||||
| WBVar00647363 | |||||||||
| WBVar00647364 | |||||||||
| WBVar00647365 | |||||||||
| WBVar00647366 | |||||||||
| WBVar00647367 | |||||||||
| WBVar00647368 | |||||||||
| WBVar00647369 | |||||||||
| WBVar00146674 | |||||||||
| WBVar00647370 | |||||||||
| WBVar00647371 | |||||||||
| WBVar00647372 | |||||||||
| WBVar00647373 | |||||||||
| WBVar00647374 | |||||||||
| WBVar00647375 | |||||||||
| WBVar00647376 | |||||||||
| WBVar00647377 | |||||||||
| WBVar00647378 | |||||||||
| WBVar00647379 | |||||||||
| WBVar00647380 | |||||||||
| WBVar00090149 | |||||||||
| WBVar00647381 | |||||||||
| WBVar00647382 | |||||||||
| WBVar00647383 | |||||||||
| WBVar00647384 | |||||||||
| WBVar00647385 | |||||||||
| WBVar00249586 | |||||||||
| WBVar01411657 | |||||||||
| WBVar01475676 | |||||||||
| WBVar01475677 | |||||||||
| WBVar00154158 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01641060 | |||||||||
| WBVar01499054 | |||||||||
| WBVar02014167 | |||||||||
| WBVar00142170 | |||||||||
| WBVar01498894 | |||||||||
| WBVar01488593 | |||||||||
| WBVar00088336 | |||||||||
| WBVar00255558 | |||||||||
| WBVar00088339 | |||||||||
| WBVar00090534 | |||||||||
| WBVar02127757 | |||||||||
| WBVar02127758 | |||||||||
| WBVar01283419 | |||||||||
| WBVar01283420 | |||||||||
| WBVar01498959 | |||||||||
| WBVar00142242 | |||||||||
| Legacy_information | [C.elegansII] n1378 : Egl, hermaphrodite sex muscles fail to differentiate; additional axon and lineage defects. ME0 (severe Mab), HME3. OA3: h769, n2087, n1971 (stronger allele, two mesodermal and six neuronal cell types pleiotropically affected; 2 additional touch cells formed in tail), etc. Cloned: encodes predicted protein with 6 C2H2 zincfinger motifs. [Desai et al. 1988; Mitani et al. 1993; MT; NH; TU] | ||||||||
| Strain (13) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00017430 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | sem-4 encodes a zinc-finger protein; sem-4 activity is required for proper development of cells in neuronal, mesodermal, and vulval cell lineages; sem-4 activity is also required for transdifferentiation of the Y rectal cell to the PDA neuron during larval development; a SEM-4::GFP reporter fusions are widely expressed with fluorescence seen in a number of different cell types including neurons, hypodermis, vulval precursor cells, and tail blast cells such as B and F. | Paper_evidence | WBPaper00002518 | |||||
| WBPaper00004300 | |||||||||
| WBPaper00040964 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Dec 2012 00:00:00 | ||||||||
| Automated_description | Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cell differentiation; regulation of transcription by RNA polymerase II; and response to oxidative stress. Located in nucleus. Expressed in several structures, including HSN; M lineage cell; rectal epithelial cell; rectum; and tail hypodermis. Human ortholog(s) of this gene implicated in several diseases, including Duane retraction syndrome; Duane-radial ray syndrome; and Holt-Oram syndrome. Is an ortholog of human SALL1 (spalt like transcription factor 1) and SALL3 (spalt like transcription factor 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (13) | ||||||||
| Molecular_info | Corresponding_CDS | F15C11.1 | |||||||
| Corresponding_transcript | F15C11.1.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (28) | |||||||||
| Gene_product_binds (380) | |||||||||
| Transcription_factor | WBTranscriptionFactor000098 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00000795 | ||||||||
| WBCnstr00000796 | |||||||||
| WBCnstr00035398 | |||||||||
| Construct_product | WBCnstr00000795 | ||||||||
| WBCnstr00000796 | |||||||||
| WBCnstr00015364 | |||||||||
| WBCnstr00016866 | |||||||||
| WBCnstr00035398 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (199) | |||||||||
| Interaction (185) | |||||||||
| WBProcess | WBbiopr:00000020 | ||||||||
| WBbiopr:00000023 | |||||||||
| WBbiopr:00000115 | |||||||||
| Map_info | Map | I | Position | 1.65489 | Error | 0.003417 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | E02H2 | |||||||
| F15C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 1446 | |||||||
| 1447 | |||||||||
| 2089 | |||||||||
| 4030 | |||||||||
| 5026 | |||||||||
| 5509 | |||||||||
| Pos_neg_data (5) | |||||||||
| Reference (87) | |||||||||
| Method | Gene |
