WormBase Tree Display for Gene: WBGene00004752
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| WBGene00004752 | SMap | S_parent | Sequence | T23G7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sec-5 | Person_evidence | WBPerson297 | |||||
| Sequence_name | T23G7.4 | ||||||||
| Molecular_name | T23G7.4 | ||||||||
| T23G7.4.1 | |||||||||
| CE03705 | |||||||||
| Other_name | CELE_T23G7.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sec-5 | ||||||||
| DB_info | Database | AceView | gene | 2J464 | |||||
| WormQTL | gene | WBGene00004752 | |||||||
| WormFlux | gene | WBGene00004752 | |||||||
| NDB | locus_tag | CELE_T23G7.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004752|UniProtKB=Q22706 | |||||||
| family | PTHR13043 | ||||||||
| NCBI | gene | 174459 | |||||||
| RefSeq | protein | NM_063557.7 | |||||||
| SwissProt | UniProtAcc | Q22706 | |||||||
| TREEFAM | TREEFAM_ID | TF105891 | |||||||
| UniProt_GCRP | UniProtAcc | Q22706 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sec | ||||||||
| Allele (58) | |||||||||
| Strain | WBStrain00006437 | ||||||||
| WBStrain00007544 | |||||||||
| WBStrain00007553 | |||||||||
| WBStrain00007654 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076088 | ||||||||
| 00076089 | |||||||||
| 00076090 | |||||||||
| 00076091 | |||||||||
| 00076092 | |||||||||
| 00076093 | |||||||||
| 00113130 | |||||||||
| 00113131 | |||||||||
| Contained_in_operon | CEOP2416 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | The sec-5 gene encodes an ortholog of SEC5 in S. cerevisiae, a component of the exocyst complex required genetically for endocytosis and for normal cellular morphology in the intestine. | Paper_evidence | WBPaper00004883 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Expressed in anchor cell; embryonic cell; and excretory canal. Is an ortholog of human EXOC2 (exocyst complex component 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23G7.4 | |||||||
| Corresponding_transcript | T23G7.4.1 | ||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf650406 | ||||||||
| WBsf223612 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035893 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065618 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085602 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081466 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053984 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081458 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1260 | ||||||||
| Expr6754 | |||||||||
| Expr11912 | |||||||||
| Expr13678 | |||||||||
| Expr1016267 | |||||||||
| Expr1032349 | |||||||||
| Expr1157529 | |||||||||
| Expr2015718 | |||||||||
| Expr2033950 | |||||||||
| Drives_construct | WBCnstr00003479 | ||||||||
| WBCnstr00019549 | |||||||||
| WBCnstr00019551 | |||||||||
| WBCnstr00035410 | |||||||||
| Construct_product | WBCnstr00019549 | ||||||||
| WBCnstr00019551 | |||||||||
| WBCnstr00035410 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (91) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | II | Position | 1.08515 | Error | 0.001275 | |||
| Positive | Positive_clone | T23G7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004883 | ||||||||
| WBPaper00027057 | |||||||||
| WBPaper00029257 | |||||||||
| WBPaper00031185 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038584 | |||||||||
| WBPaper00042952 | |||||||||
| WBPaper00045983 | |||||||||
| WBPaper00048680 | |||||||||
| WBPaper00048938 | |||||||||
| WBPaper00052149 | |||||||||
| WBPaper00052172 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057682 | |||||||||
| WBPaper00063062 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
