WormBase Tree Display for Gene: WBGene00004509

WBGene00004509 SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: rrf-2 Person_evidence: WBPerson398
      Sequence_name: M01G12.12
      Molecular_name: M01G12.12
        M01G12.12.1
        CE23872
        M01G12.12.2
      Other_name: CELE_M01G12.12 Accession_evidence: NDB BX284601
      Public_name: rrf-2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rrf
    Allele: WBVar01286389
      WBVar00676784
      WBVar00676785
      WBVar01286391
      WBVar00676786
      WBVar01286392
      WBVar02100541
      WBVar00676787
      WBVar01286393
      WBVar00676788
      WBVar01286394
      WBVar00676789
      WBVar01286396
      WBVar00676790
      WBVar01286399
      WBVar00676791
      WBVar01286400
      WBVar01286401
      WBVar00676792
      WBVar00676793
      WBVar00676794
      WBVar00676795
      WBVar00676796
      WBVar00676797
      WBVar00676798
      WBVar00676799
      WBVar00676800
      WBVar00676801
      WBVar00676802
      WBVar00676803
      WBVar00676804
      WBVar00676805
      WBVar00676806
      WBVar00676807
      WBVar01958071
      WBVar01499739
      WBVar01900354
      WBVar01713695
      WBVar01713696
      WBVar02102605
      WBVar01713697
      WBVar01713698
      WBVar01713699
      WBVar01713700
      WBVar01574218
      WBVar01574219
      WBVar02121936
      WBVar01574220
      WBVar01574221
      WBVar01574222
      WBVar01574223
      WBVar01574224
      WBVar01392340
      WBVar01499204
      WBVar01641216
      WBVar02095447
      WBVar01641217
      WBVar01641218
      WBVar01663907
      WBVar01663908
      WBVar01663909
      WBVar01663910
      WBVar01663911
      WBVar01663912
      WBVar01663913
      WBVar01663914
      WBVar02097311
      WBVar01914740
      WBVar02123445
      WBVar02151326
      WBVar01499055
      WBVar00601771
      WBVar00601773
      WBVar01399188
      WBVar02124754
      WBVar00347440
      WBVar00347441
      WBVar00347442
      WBVar00347443
      WBVar02002094
      WBVar00347444
      WBVar00347445
      WBVar00540295
      WBVar00347446
      WBVar00540296
      WBVar01499999
      WBVar00347447
      WBVar00347448
      WBVar00540301
      WBVar00347449
      WBVar00347450
      WBVar00347451
      WBVar00347452
      WBVar00158394
      WBVar00347453
      WBVar00158395
      WBVar00347454
      WBVar00158396
      WBVar00347455
      WBVar00158397
      WBVar00347456
      WBVar00158398
      WBVar00347457
      WBVar00347458
      WBVar00158399
      WBVar00158400
      WBVar00347459
      WBVar00158401
      WBVar01347934
      WBVar00158402
      WBVar00158403
      WBVar01347945
      WBVar00158404
      WBVar02128655
      WBVar01826463
      WBVar01347956
      WBVar02122202
      WBVar02128656
      WBVar00158405
      WBVar02128657
      WBVar00158406
      WBVar01347967
      WBVar02128658
      WBVar00158407
      WBVar02121101
      WBVar01500019
      WBVar00158408
      WBVar02128659
      WBVar00158409
      WBVar00260337
      WBVar00158410
      WBVar00158411
      WBVar01476287
      WBVar00091517
      WBVar00676746
      WBVar00676747
      WBVar00676748
      WBVar00676749
      WBVar01286352
      WBVar00676750
      WBVar00676751
      WBVar01286353
      WBVar00091036
      WBVar00676752
      WBVar01286354
      WBVar01286355
      WBVar00676753
      WBVar00676754
      WBVar01286358
      WBVar00676755
      WBVar01286360
      WBVar00676756
      WBVar00676757
      WBVar01286363
      WBVar00676758
      WBVar01286364
      WBVar00239427
      WBVar00676759
      WBVar00676760
      WBVar01286365
      WBVar01286366
      WBVar00676761
      WBVar01286367
      WBVar00676762
      WBVar00676763
      WBVar01286368
      WBVar01350894
      WBVar00676764
      WBVar01350895
      WBVar01286369
      WBVar00676765
      WBVar01286370
      WBVar02122421
      WBVar01350906
      WBVar01286371
      WBVar00676766
      WBVar01350907
      WBVar01286372
      WBVar00676767
      WBVar00676768
      WBVar01286374
      WBVar00676769
      WBVar01286375
      WBVar00676770
      WBVar02119296
      WBVar00676771
      WBVar01286376
      WBVar00676772
      WBVar01286377
      WBVar00676773
      WBVar01286378
      WBVar02124453
      WBVar00676774
      WBVar01286379
      WBVar00676775
      WBVar01286380
      WBVar01286381
      WBVar00676776
      WBVar01286382
      WBVar00676777
      WBVar01286383
      WBVar00676778
      WBVar00240324
      WBVar01498959
      WBVar00676779
      WBVar00676780
      WBVar01286385
      WBVar00676781
      WBVar01286386
      WBVar00676782
      WBVar01286387
      WBVar02121701
      WBVar00676783
      WBVar01286388
    Strain: WBStrain00007151
    In_cluster: conserved_miRNA_siRNA_cluster
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog (44)
    Paralog: WBGene00001214 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00004508 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00004510 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: rrf-2 encodes an RNA-directed RNA polymerase (RdRP) homolog of unknown function; RRF-2 is not obviously required for either somatic or germline RNAi, or for transitive RNAi. Paper_evidence: WBPaper00004137
            WBPaper00004981
            WBPaper00013304
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA-dependent RNA polymerase activity. Acts upstream of or within IRE1-mediated unfolded protein response. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M01G12.12
    Corresponding_transcript: M01G12.12.1
      M01G12.12.2
    Associated_feature: WBsf985471
      WBsf985472
      WBsf1010840
      WBsf220407
      WBsf220408
  Experimental_info: RNAi_result: WBRNAi00004657 Inferred_automatically: RNAi_primary
      WBRNAi00050780 Inferred_automatically: RNAi_primary
      WBRNAi00034366 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015641
      Expr1032311
      Expr1154473
      Expr2015544
      Expr2033779
    Regulate_expr_cluster: WBPaper00027111:rrf-2(ok210)_downregulated
      WBPaper00027111:rrf-2(ok210)_upregulated
    Microarray_results (18)
    Expression_cluster (237)
    Interaction: WBInteraction000301293
      WBInteraction000305949
      WBInteraction000333765
      WBInteraction000376484
      WBInteraction000437306
      WBInteraction000524314
    WBProcess: WBbiopr:00000057
  Map_info: Map: I Position: 13.0561 Error: 0.002235
    Positive: Positive_clone: M01G12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point (2)
    Pseudo_map_position
  Reference: WBPaper00004137
    WBPaper00004173
    WBPaper00004981
    WBPaper00012007
    WBPaper00023918
    WBPaper00031961
    WBPaper00031962
    WBPaper00035324
    WBPaper00038491
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene