WormBase Tree Display for Gene: WBGene00004499
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| WBGene00004499 | SMap | S_parent | Sequence | C26F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-30 | |||||||
| Sequence_name | C26F1.4 | ||||||||
| Molecular_name | C26F1.4 | ||||||||
| C26F1.4.1 | |||||||||
| CE06878 | |||||||||
| Other_name | CELE_C26F1.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rps-30 | ||||||||
| DB_info | Database | AceView | gene | 5I257 | |||||
| WormQTL | gene | WBGene00004499 | |||||||
| WormFlux | gene | WBGene00004499 | |||||||
| NDB | locus_tag | CELE_C26F1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004499|UniProtKB=Q18231 | |||||||
| family | PTHR12650 | ||||||||
| NCBI | gene | 179154 | |||||||
| RefSeq | protein | NM_072606.7 | |||||||
| TREEFAM | TREEFAM_ID | TF313779 | |||||||
| TrEMBL | UniProtAcc | Q18231 | |||||||
| UniProt_GCRP | UniProtAcc | Q18231 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (20) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps30 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060620 | ||||||||
| 00060621 | |||||||||
| 00060622 | |||||||||
| 00113041 | |||||||||
| 00113042 | |||||||||
| 00113043 | |||||||||
| Contained_in_operon | CEOP5164 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | rps-30 encodes two proteins, a small ribosomal subunit S30 protein and ubiquitin, which is cleaved from the ribosomal protein posttranslationally; by homology, S30 is predicted to function in protein biosynthesis and ubiquitin in protein degradation; in C. elegans, loss of rps-30 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human FAU (FAU ubiquitin like and ribosomal protein S30 fusion). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C26F1.4 | |||||||
| Corresponding_transcript | C26F1.4.1 | ||||||||
| Other_sequence (239) | |||||||||
| Associated_feature | WBsf1000512 | ||||||||
| WBsf232009 | |||||||||
| WBsf232010 | |||||||||
| WBsf232011 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011222 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00095037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024645 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024644 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029238 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041282 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076163 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11909 | ||||||||
| Expr1014867 | |||||||||
| Expr1032302 | |||||||||
| Expr1145323 | |||||||||
| Expr2015526 | |||||||||
| Expr2033761 | |||||||||
| Drives_construct | WBCnstr00019733 | ||||||||
| WBCnstr00035442 | |||||||||
| Construct_product | WBCnstr00035442 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction (167) | |||||||||
| Map_info | Map | V | Position | 0.891291 | Error | 0.002668 | |||
| Positive | Positive_clone | C26F1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065278 | |||||||||
| Remark | This transcript encodes both Ribosomal Protein S30, and ubiquitin, which is cleaved off post-translationally [Jones D, Candido EPM]. 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
