WormBase Tree Display for Gene: WBGene00004499
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| WBGene00004499 | SMap | S_parent | Sequence | C26F1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-30 | |||||||
| Sequence_name | C26F1.4 | ||||||||
| Molecular_name | C26F1.4 | ||||||||
| C26F1.4.1 | |||||||||
| CE06878 | |||||||||
| Other_name | CELE_C26F1.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rps-30 | ||||||||
| DB_info | Database | AceView | gene | 5I257 | |||||
| WormQTL | gene | WBGene00004499 | |||||||
| WormFlux | gene | WBGene00004499 | |||||||
| NDB | locus_tag | CELE_C26F1.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004499|UniProtKB=Q18231 | |||||||
| family | PTHR12650 | ||||||||
| NCBI | gene | 179154 | |||||||
| RefSeq | protein | NM_072606.7 | |||||||
| TREEFAM | TREEFAM_ID | TF313779 | |||||||
| TrEMBL | UniProtAcc | Q18231 | |||||||
| UniProt_GCRP | UniProtAcc | Q18231 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (20) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps30 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00060620 | ||||||||
| 00060621 | |||||||||
| 00060622 | |||||||||
| 00113041 | |||||||||
| 00113042 | |||||||||
| 00113043 | |||||||||
| Contained_in_operon | CEOP5164 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description (2) | |||||||||
| Molecular_info | Corresponding_CDS | C26F1.4 | |||||||
| Corresponding_transcript | C26F1.4.1 | ||||||||
| Other_sequence (239) | |||||||||
| Associated_feature | WBsf1000512 | ||||||||
| WBsf232009 | |||||||||
| WBsf232010 | |||||||||
| WBsf232011 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011222 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00095037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024645 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024644 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029238 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041282 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076163 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11909 | ||||||||
| Expr1014867 | |||||||||
| Expr1032302 | |||||||||
| Expr1145323 | |||||||||
| Expr2015526 | |||||||||
| Expr2033761 | |||||||||
| Drives_construct | WBCnstr00019733 | ||||||||
| WBCnstr00035442 | |||||||||
| Construct_product | WBCnstr00035442 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction (167) | |||||||||
| Map_info | Map | V | Position | 0.891291 | Error | 0.002668 | |||
| Positive | Positive_clone | C26F1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065278 | |||||||||
| Remark | This transcript encodes both Ribosomal Protein S30, and ubiquitin, which is cleaved off post-translationally [Jones D, Candido EPM]. 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
