WormBase Tree Display for Gene: WBGene00004482
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| WBGene00004482 | SMap | S_parent | Sequence | C16A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rps-13 | |||||||
| Sequence_name | C16A3.9 | ||||||||
| Molecular_name | C16A3.9 | ||||||||
| C16A3.9.1 | |||||||||
| CE04009 | |||||||||
| Other_name | CELE_C16A3.9 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rps-13 | ||||||||
| DB_info | Database | AceView | gene | 3H464 | |||||
| WormQTL | gene | WBGene00004482 | |||||||
| WormFlux | gene | WBGene00004482 | |||||||
| NDB | locus_tag | CELE_C16A3.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004482|UniProtKB=P51404 | |||||||
| family | PTHR11885 | ||||||||
| NCBI | gene | 175901 | |||||||
| RefSeq | protein | NM_065992.8 | |||||||
| SwissProt | UniProtAcc | P51404 | |||||||
| TREEFAM | TREEFAM_ID | TF300190 | |||||||
| UniProt_GCRP | UniProtAcc | P51404 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rps | ||||||||
| Allele (18) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rps13 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00014955 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Concise_description | rps-13 encodes a small ribosomal subunit S13 protein; by homology, RPS-13 is predicted to function in protein biosynthesis; in C. elegans, RPS-13 activity is required for embryonic and germline development. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS13 (ribosomal protein S13). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16A3.9 | |||||||
| Corresponding_transcript | C16A3.9.1 | ||||||||
| Other_sequence (265) | |||||||||
| Associated_feature | WBsf651119 | ||||||||
| WBsf666985 | |||||||||
| WBsf666986 | |||||||||
| WBsf992741 | |||||||||
| WBsf226808 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1016696 | ||||||||
| Expr1032285 | |||||||||
| Expr1144714 | |||||||||
| Expr2015507 | |||||||||
| Expr2033742 | |||||||||
| Drives_construct | WBCnstr00035451 | ||||||||
| Construct_product | WBCnstr00035451 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (222) | |||||||||
| Map_info | Map | III | Position | -1.33671 | Error | 0.007393 | |||
| Positive | Positive_clone | C16A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004849 | ||||||||
| WBPaper00025088 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00035215 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
