WormBase Tree Display for Gene: WBGene00004482

WBGene00004482 SMap: S_parent: Sequence: C16A3
  Identity: Version: 1
    Name: CGC_name: rps-13
      Sequence_name: C16A3.9
      Molecular_name: C16A3.9
        C16A3.9.1
        CE04009
      Other_name: CELE_C16A3.9 Accession_evidence: NDB BX284603
      Public_name: rps-13
    DB_info: Database: AceView gene 3H464
        WormQTL gene WBGene00004482
        WormFlux gene WBGene00004482
        NDB locus_tag CELE_C16A3.9
        Panther gene CAEEL|WormBase=WBGene00004482|UniProtKB=P51404
          family PTHR11885
        NCBI gene 175901
        RefSeq protein NM_065992.8
        SwissProt UniProtAcc P51404
        TREEFAM TREEFAM_ID TF300190
        UniProt_GCRP UniProtAcc P51404
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (18)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps13 using blastP
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00055464 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00038862 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146185 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00114251 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00122097 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00233980 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4279 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g11670 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21400 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g114 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22735 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13406 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15816 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13304 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2038 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g21839 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g21844 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g3613 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_05388.g19559 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-13 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16124 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00408.g10935 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16434 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010730 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04581 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11698 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30170700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7922 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244804 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260337 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00301163 Trichuris muris From_analysis: WormBase-Compara
      WBGene00302916 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000002471 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0010265 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040625-52 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10386 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1915302 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621027 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1596535 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1584372 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00014955 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Concise_description: rps-13 encodes a small ribosomal subunit S13 protein; by homology, RPS-13 is predicted to function in protein biosynthesis; in C. elegans, RPS-13 activity is required for embryonic and germline development. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS13 (ribosomal protein S13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C16A3.9
    Corresponding_transcript: C16A3.9.1
    Other_sequence (265)
    Associated_feature: WBsf651119
      WBsf666985
      WBsf666986
      WBsf992741
      WBsf226808
  Experimental_info: RNAi_result (13)
    Expr_pattern: Expr1016696
      Expr1032285
      Expr1144714
      Expr2015507
      Expr2033742
    Drives_construct: WBCnstr00035451
    Construct_product: WBCnstr00035451
    Microarray_results (19)
    Expression_cluster (168)
    Interaction (222)
  Map_info: Map: III Position: -1.33671 Error: 0.007393
    Positive: Positive_clone: C16A3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00004849
    WBPaper00025088
    WBPaper00032502
    WBPaper00035215
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene