WormBase Tree Display for Gene: WBGene00004466

WBGene00004466 SMap: S_parent: Sequence: B0205
  Identity: Version: 1
    Name: CGC_name: rpn-10 Person_evidence: WBPerson1551
      Sequence_name: B0205.3
      Molecular_name: B0205.3
        B0205.3.1
        CE26355
      Other_name: mcb-1 CGC_data_submission
        CELE_B0205.3 Accession_evidence: NDB BX284601
      Public_name: rpn-10
    DB_info: Database: AceView gene 1L308
        WormQTL gene WBGene00004466
        WormFlux gene WBGene00004466
        NDB locus_tag CELE_B0205.3
        Panther gene CAEEL|WormBase=WBGene00004466|UniProtKB=O61742
          family PTHR10223
        NCBI gene 172977
        RefSeq protein NM_060408.5
        SwissProt UniProtAcc O61742
        TREEFAM TREEFAM_ID TF106232
        UniProt_GCRP UniProtAcc O61742
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (25)
    Strain: WBStrain00036549
      WBStrain00036819
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP1640
    Ortholog (42)
    Structured_description: Concise_description: rpn-10 encodes a protein that contains two ubiquitin interaction motifs and is a member of the von Willebrand factor, type A superfamily similar to the mouse 26S proteasome non-ATP regulatory subunit 4. Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable polyubiquitin modification-dependent protein binding activity. Involved in spermatogenesis and ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Expressed in several structures, including excretory cell; gonad; intestine; pharynx; and vulva. Is an ortholog of human PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0205.3
    Corresponding_transcript: B0205.3.1
    Other_sequence (75)
    Associated_feature: WBsf220285
      WBsf220286
  Experimental_info: RNAi_result (38)
    Expr_pattern: Expr12708
      Expr1015482
      Expr1032269
      Expr1142914
      Expr2015485
      Expr2033720
    Drives_construct: WBCnstr00022776
      WBCnstr00035463
    Construct_product: WBCnstr00022776
      WBCnstr00035463
    Regulate_expr_cluster: WBPaper00049177:rpn-10(ok1865)_downregulated
      WBPaper00049177:rpn-10(ok1865)_upregulated
    Antibody: WBAntibody00001171
    Microarray_results (23)
    Expression_cluster (118)
    Interaction (189)
    WBProcess: WBbiopr:00000076
  Map_info: Map: I Position: 5.06464 Error: 0.001194
    Positive: Positive_clone: B0205 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4913
    Pseudo_map_position
  Reference (29)
  Remark: Sequence connection from [Nayak S]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene