WormBase Tree Display for Gene: WBGene00004466
expand all nodes | collapse all nodes | view schema
| WBGene00004466 | SMap | S_parent | Sequence | B0205 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-10 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | B0205.3 | ||||||||
| Molecular_name | B0205.3 | ||||||||
| B0205.3.1 | |||||||||
| CE26355 | |||||||||
| Other_name | mcb-1 | CGC_data_submission | |||||||
| CELE_B0205.3 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rpn-10 | ||||||||
| DB_info | Database | AceView | gene | 1L308 | |||||
| WormQTL | gene | WBGene00004466 | |||||||
| WormFlux | gene | WBGene00004466 | |||||||
| NDB | locus_tag | CELE_B0205.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004466|UniProtKB=O61742 | |||||||
| family | PTHR10223 | ||||||||
| NCBI | gene | 172977 | |||||||
| RefSeq | protein | NM_060408.5 | |||||||
| SwissProt | UniProtAcc | O61742 | |||||||
| TREEFAM | TREEFAM_ID | TF106232 | |||||||
| UniProt_GCRP | UniProtAcc | O61742 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00036549 | ||||||||
| WBStrain00036819 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP1640 | ||||||||
| Ortholog (42) | |||||||||
| Structured_description | Concise_description | rpn-10 encodes a protein that contains two ubiquitin interaction motifs and is a member of the von Willebrand factor, type A superfamily similar to the mouse 26S proteasome non-ATP regulatory subunit 4. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable polyubiquitin modification-dependent protein binding activity. Involved in spermatogenesis and ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Expressed in several structures, including excretory cell; gonad; intestine; pharynx; and vulva. Is an ortholog of human PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0205.3 | |||||||
| Corresponding_transcript | B0205.3.1 | ||||||||
| Other_sequence (75) | |||||||||
| Associated_feature | WBsf220285 | ||||||||
| WBsf220286 | |||||||||
| Experimental_info | RNAi_result (38) | ||||||||
| Expr_pattern | Expr12708 | ||||||||
| Expr1015482 | |||||||||
| Expr1032269 | |||||||||
| Expr1142914 | |||||||||
| Expr2015485 | |||||||||
| Expr2033720 | |||||||||
| Drives_construct | WBCnstr00022776 | ||||||||
| WBCnstr00035463 | |||||||||
| Construct_product | WBCnstr00022776 | ||||||||
| WBCnstr00035463 | |||||||||
| Regulate_expr_cluster | WBPaper00049177:rpn-10(ok1865)_downregulated | ||||||||
| WBPaper00049177:rpn-10(ok1865)_upregulated | |||||||||
| Antibody | WBAntibody00001171 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (189) | |||||||||
| WBProcess | WBbiopr:00000076 | ||||||||
| Map_info | Map | I | Position | 5.06464 | Error | 0.001194 | |||
| Positive | Positive_clone | B0205 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4913 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025264 | ||||||||
| WBPaper00025875 | |||||||||
| WBPaper00027634 | |||||||||
| WBPaper00027724 | |||||||||
| WBPaper00028730 | |||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030965 | |||||||||
| WBPaper00030999 | |||||||||
| WBPaper00031869 | |||||||||
| WBPaper00035234 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041601 | |||||||||
| WBPaper00045571 | |||||||||
| WBPaper00047587 | |||||||||
| WBPaper00049177 | |||||||||
| WBPaper00051586 | |||||||||
| WBPaper00052455 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00056554 | |||||||||
| WBPaper00056693 | |||||||||
| WBPaper00056873 | |||||||||
| WBPaper00057441 | |||||||||
| WBPaper00057791 | |||||||||
| WBPaper00062237 | |||||||||
| WBPaper00063122 | |||||||||
| WBPaper00063899 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00065621 | |||||||||
| Remark | Sequence connection from [Nayak S] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
