WormBase Tree Display for Gene: WBGene00004466

WBGene00004466 SMap: S_parent: Sequence: B0205
  Identity: Version: 1
    Name: CGC_name: rpn-10 Person_evidence: WBPerson1551
      Sequence_name: B0205.3
      Molecular_name: B0205.3
        B0205.3.1
        CE26355
      Other_name: mcb-1 CGC_data_submission
        CELE_B0205.3 Accession_evidence: NDB BX284601
      Public_name: rpn-10
    DB_info: Database: AceView gene 1L308
        WormQTL gene WBGene00004466
        WormFlux gene WBGene00004466
        NDB locus_tag CELE_B0205.3
        Panther gene CAEEL|WormBase=WBGene00004466|UniProtKB=O61742
          family PTHR10223
        NCBI gene 172977
        RefSeq protein NM_060408.5
        SwissProt UniProtAcc O61742
        TREEFAM TREEFAM_ID TF106232
        UniProt_GCRP UniProtAcc O61742
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (25)
    Strain: WBStrain00036549
      WBStrain00036819
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP1640
    Ortholog (42)
    Structured_description: Concise_description: rpn-10 encodes a protein that contains two ubiquitin interaction motifs and is a member of the von Willebrand factor, type A superfamily similar to the mouse 26S proteasome non-ATP regulatory subunit 4. Curator_confirmed: WBPerson48
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable polyubiquitin modification-dependent protein binding activity. Involved in spermatogenesis and ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Expressed in several structures, including excretory cell; gonad; intestine; pharynx; and vulva. Is an ortholog of human PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0205.3
    Corresponding_transcript: B0205.3.1
    Other_sequence (75)
    Associated_feature: WBsf220285
      WBsf220286
  Experimental_info: RNAi_result (38)
    Expr_pattern: Expr12708
      Expr1015482
      Expr1032269
      Expr1142914
      Expr2015485
      Expr2033720
    Drives_construct: WBCnstr00022776
      WBCnstr00035463
    Construct_product: WBCnstr00022776
      WBCnstr00035463
    Regulate_expr_cluster: WBPaper00049177:rpn-10(ok1865)_downregulated
      WBPaper00049177:rpn-10(ok1865)_upregulated
    Antibody: WBAntibody00001171
    Microarray_results (23)
    Expression_cluster (118)
    Interaction: WBInteraction000008837
      WBInteraction000009133
      WBInteraction000009135
      WBInteraction000009136
      WBInteraction000009218
      WBInteraction000040957
      WBInteraction000047329
      WBInteraction000047654
      WBInteraction000050591
      WBInteraction000050592
      WBInteraction000050593
      WBInteraction000050594
      WBInteraction000050595
      WBInteraction000050596
      WBInteraction000050773
      WBInteraction000050807
      WBInteraction000051570
      WBInteraction000051634
      WBInteraction000101706
      WBInteraction000102920
      WBInteraction000102926
      WBInteraction000102978
      WBInteraction000103051
      WBInteraction000103140
      WBInteraction000104354
      WBInteraction000104565
      WBInteraction000104908
      WBInteraction000105137
      WBInteraction000105483
      WBInteraction000105880
      WBInteraction000106288
      WBInteraction000106399
      WBInteraction000106437
      WBInteraction000109540
      WBInteraction000111597
      WBInteraction000111598
      WBInteraction000111599
      WBInteraction000111600
      WBInteraction000111601
      WBInteraction000111602
      WBInteraction000111603
      WBInteraction000111604
      WBInteraction000111605
      WBInteraction000111606
      WBInteraction000111607
      WBInteraction000111608
      WBInteraction000111609
      WBInteraction000111610
      WBInteraction000111611
      WBInteraction000111612
      WBInteraction000111613
      WBInteraction000111614
      WBInteraction000118363
      WBInteraction000121273
      WBInteraction000148592
      WBInteraction000148881
      WBInteraction000154985
      WBInteraction000154986
      WBInteraction000154987
      WBInteraction000154988
      WBInteraction000159986
      WBInteraction000162496
      WBInteraction000167523
      WBInteraction000168838
      WBInteraction000186439
      WBInteraction000192016
      WBInteraction000216087
      WBInteraction000218082
      WBInteraction000218083
      WBInteraction000218084
      WBInteraction000218085
      WBInteraction000218086
      WBInteraction000218087
      WBInteraction000218088
      WBInteraction000218089
      WBInteraction000218090
      WBInteraction000218091
      WBInteraction000218092
      WBInteraction000218093
      WBInteraction000218094
      WBInteraction000218095
      WBInteraction000218096
      WBInteraction000218097
      WBInteraction000218098
      WBInteraction000218099
      WBInteraction000218666
      WBInteraction000222812
      WBInteraction000225698
      WBInteraction000240515
      WBInteraction000252140
      WBInteraction000252141
      WBInteraction000256228
      WBInteraction000279210
      WBInteraction000287686
      WBInteraction000308154
      WBInteraction000310363
      WBInteraction000323155
      WBInteraction000332983
      WBInteraction000335976
      WBInteraction000338987
      WBInteraction000339780
      WBInteraction000349532
      WBInteraction000351832
      WBInteraction000355090
      WBInteraction000367345
      WBInteraction000371193
      WBInteraction000374626
      WBInteraction000380382
      WBInteraction000387236
      WBInteraction000387935
      WBInteraction000388585
      WBInteraction000398794
      WBInteraction000400996
      WBInteraction000403632
      WBInteraction000413311
      WBInteraction000420498
      WBInteraction000420767
      WBInteraction000421252
      WBInteraction000432246
      WBInteraction000436290
      WBInteraction000436317
      WBInteraction000443317
      WBInteraction000461956
      WBInteraction000464075
      WBInteraction000464195
      WBInteraction000465819
      WBInteraction000466533
      WBInteraction000466534
      WBInteraction000467160
      WBInteraction000468004
      WBInteraction000470173
      WBInteraction000470457
      WBInteraction000471907
      WBInteraction000472985
      WBInteraction000472986
      WBInteraction000473176
      WBInteraction000473381
      WBInteraction000473514
      WBInteraction000473932
      WBInteraction000473933
      WBInteraction000473968
      WBInteraction000473969
      WBInteraction000474394
      WBInteraction000474488
      WBInteraction000475171
      WBInteraction000502668
      WBInteraction000502849
      WBInteraction000534937
      WBInteraction000534938
      WBInteraction000534939
      WBInteraction000534940
      WBInteraction000534941
      WBInteraction000539771
      WBInteraction000546977
      WBInteraction000546978
      WBInteraction000546979
      WBInteraction000550884
      WBInteraction000550956
      WBInteraction000554983
      WBInteraction000558473
      WBInteraction000559012
      WBInteraction000560522
      WBInteraction000560523
      WBInteraction000560524
      WBInteraction000560525
      WBInteraction000560526
      WBInteraction000560527
      WBInteraction000560528
      WBInteraction000560529
      WBInteraction000560530
      WBInteraction000560531
      WBInteraction000560532
      WBInteraction000560533
      WBInteraction000560534
      WBInteraction000560535
      WBInteraction000560536
      WBInteraction000560537
      WBInteraction000560538
      WBInteraction000560539
      WBInteraction000560540
      WBInteraction000560541
      WBInteraction000560542
      WBInteraction000560543
      WBInteraction000562690
      WBInteraction000563223
      WBInteraction000571881
      WBInteraction000577737
      WBInteraction000580343
      WBInteraction000583108
    WBProcess: WBbiopr:00000076
  Map_info: Map: I Position: 5.06464 Error: 0.001194
    Positive: Positive_clone: B0205 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4913
    Pseudo_map_position
  Reference (29)
  Remark: Sequence connection from [Nayak S]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene