WormBase Tree Display for Gene: WBGene00004463
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| WBGene00004463 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F49C12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-7 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F49C12.8 | ||||||||
| Molecular_name | F49C12.8 | ||||||||
| F49C12.8.1 | |||||||||
| CE03368 | |||||||||
| F49C12.8.2 | |||||||||
| Other_name | CELE_F49C12.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rpn-7 | ||||||||
| DB_info | Database | AceView | gene | 4K81 | |||||
| WormQTL | gene | WBGene00004463 | |||||||
| WormFlux | gene | WBGene00004463 | |||||||
| NDB | locus_tag | CELE_F49C12.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004463|UniProtKB=Q20585 | |||||||
| family | PTHR14145 | ||||||||
| NCBI | gene | 177753 | |||||||
| RefSeq | protein | NM_069231.7 | |||||||
| SwissProt | UniProtAcc | Q20585 | |||||||
| TREEFAM | TREEFAM_ID | TF313819 | |||||||
| UniProt_GCRP | UniProtAcc | Q20585 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00002821 | ||||||||
| WBStrain00003270 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00068460 | ||||||||
| 00068461 | |||||||||
| 00068462 | |||||||||
| 00068463 | |||||||||
| Contained_in_operon | CEOP4680 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000813 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpn-7 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that affects fertility and embryonic viability. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00004888 | |||||||||
| WBPaper00005599 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Expressed in tail. Is an ortholog of human PSMD6 (proteasome 26S subunit, non-ATPase 6). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F49C12.8 | |||||||
| Corresponding_transcript | F49C12.8.1 | ||||||||
| F49C12.8.2 | |||||||||
| Other_sequence (109) | |||||||||
| Associated_feature | WBsf655039 | ||||||||
| WBsf660503 | |||||||||
| WBsf228808 | |||||||||
| WBsf228809 | |||||||||
| Experimental_info | RNAi_result (40) | ||||||||
| Expr_pattern | Chronogram114 | ||||||||
| Chronogram1724 | |||||||||
| Expr6121 | |||||||||
| Expr6122 | |||||||||
| Expr12710 | |||||||||
| Expr1014849 | |||||||||
| Expr1032266 | |||||||||
| Expr1151643 | |||||||||
| Expr2015495 | |||||||||
| Expr2033730 | |||||||||
| Drives_construct | WBCnstr00003348 | ||||||||
| WBCnstr00004585 | |||||||||
| WBCnstr00035466 | |||||||||
| Construct_product | WBCnstr00035466 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (200) | |||||||||
| Map_info | Map | IV | Position | 4.16054 | Error | 0.004059 | |||
| Positive | Positive_clone | F49C12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
