WormBase Tree Display for Gene: WBGene00004463
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WBGene00004463 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F49C12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | rpn-7 | Person_evidence | WBPerson1551 | |||||
Sequence_name | F49C12.8 | ||||||||
Molecular_name | F49C12.8 | ||||||||
F49C12.8.1 | |||||||||
CE03368 | |||||||||
F49C12.8.2 | |||||||||
Other_name | CELE_F49C12.8 | Accession_evidence | NDB | BX284604 | |||||
Public_name | rpn-7 | ||||||||
DB_info | Database | AceView | gene | 4K81 | |||||
WormQTL | gene | WBGene00004463 | |||||||
WormFlux | gene | WBGene00004463 | |||||||
NDB | locus_tag | CELE_F49C12.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004463|UniProtKB=Q20585 | |||||||
family | PTHR14145 | ||||||||
NCBI | gene | 177753 | |||||||
RefSeq | protein | NM_069231.7 | |||||||
SwissProt | UniProtAcc | Q20585 | |||||||
TREEFAM | TREEFAM_ID | TF313819 | |||||||
UniProt_GCRP | UniProtAcc | Q20585 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpn | ||||||||
Allele (24) | |||||||||
Strain | WBStrain00002821 | ||||||||
WBStrain00003270 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00068460 | ||||||||
00068461 | |||||||||
00068462 | |||||||||
00068463 | |||||||||
Contained_in_operon | CEOP4680 | ||||||||
Ortholog (39) | |||||||||
Paralog | WBGene00000813 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | rpn-7 is predicted to encode a non-ATPase subunit of the 19S regulatory complex of the proteasome that affects fertility and embryonic viability. | Paper_evidence | WBPaper00004651 | |||||
WBPaper00004888 | |||||||||
WBPaper00005599 | |||||||||
WBPaper00005654 | |||||||||
WBPaper00006395 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle. Expressed in tail. Is an ortholog of human PSMD6 (proteasome 26S subunit, non-ATPase 6). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F49C12.8 | |||||||
Corresponding_transcript | F49C12.8.1 | ||||||||
F49C12.8.2 | |||||||||
Other_sequence (109) | |||||||||
Associated_feature (4) | |||||||||
Experimental_info | RNAi_result (40) | ||||||||
Expr_pattern | Chronogram114 | ||||||||
Chronogram1724 | |||||||||
Expr6121 | |||||||||
Expr6122 | |||||||||
Expr12710 | |||||||||
Expr1014849 | |||||||||
Expr1032266 | |||||||||
Expr1151643 | |||||||||
Expr2015495 | |||||||||
Expr2033730 | |||||||||
Drives_construct | WBCnstr00003348 | ||||||||
WBCnstr00004585 | |||||||||
WBCnstr00035466 | |||||||||
Construct_product | WBCnstr00035466 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (171) | |||||||||
Interaction (200) | |||||||||
Map_info | Map | IV | Position | 4.16054 | Error | 0.004059 | |||
Positive | Positive_clone | F49C12 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (18) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |