WormBase Tree Display for Gene: WBGene00004461
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| WBGene00004461 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F10G7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-5 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | F10G7.8 | ||||||||
| Molecular_name | F10G7.8 | ||||||||
| F10G7.8.1 | |||||||||
| CE02632 | |||||||||
| F10G7.8.2 | |||||||||
| Other_name | CELE_F10G7.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rpn-5 | ||||||||
| DB_info | Database | AceView | gene | 2E988 | |||||
| WormQTL | gene | WBGene00004461 | |||||||
| WormFlux | gene | WBGene00004461 | |||||||
| NDB | locus_tag | CELE_F10G7.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004461|UniProtKB=Q19324 | |||||||
| family | PTHR10855 | ||||||||
| NCBI | gene | 173807 | |||||||
| RefSeq | protein | NM_062434.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105721 | |||||||
| TrEMBL | UniProtAcc | Q19324 | |||||||
| UniProt_GCRP | UniProtAcc | Q19324 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (36) | |||||||||
| Strain | WBStrain00003178 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00064355 | ||||||||
| 00064356 | |||||||||
| 00064357 | |||||||||
| 00064358 | |||||||||
| Ortholog (45) | |||||||||
| Paralog | WBGene00000816 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD12 (proteasome 26S subunit, non-ATPase 12). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F10G7.8 | |||||||
| Corresponding_transcript | F10G7.8.1 | ||||||||
| F10G7.8.2 | |||||||||
| Other_sequence (77) | |||||||||
| Associated_feature | WBsf650009 | ||||||||
| WBsf222942 | |||||||||
| WBsf222943 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Chronogram2010 | ||||||||
| Expr5728 | |||||||||
| Expr1014181 | |||||||||
| Expr1032264 | |||||||||
| Expr1148259 | |||||||||
| Expr2015492 | |||||||||
| Expr2033727 | |||||||||
| Drives_construct | WBCnstr00003654 | ||||||||
| WBCnstr00035467 | |||||||||
| Construct_product | WBCnstr00035467 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (157) | |||||||||
| Interaction (177) | |||||||||
| Map_info | Map | II | Position | -3.61141 | Error | 0.007674 | |||
| Positive | Positive_clone | F10G7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029221 | ||||||||
| WBPaper00030965 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00056554 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00061698 | |||||||||
| WBPaper00063122 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
