WormBase Tree Display for Gene: WBGene00004461

WBGene00004461 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F10G7
  Identity: Version: 1
    Name: CGC_name: rpn-5 Person_evidence: WBPerson1551
      Sequence_name: F10G7.8
      Molecular_name: F10G7.8
        F10G7.8.1
        CE02632
        F10G7.8.2
      Other_name: CELE_F10G7.8 Accession_evidence: NDB BX284602
      Public_name: rpn-5
    DB_info: Database: AceView gene 2E988
        WormQTL gene WBGene00004461
        WormFlux gene WBGene00004461
        NDB locus_tag CELE_F10G7.8
        Panther gene CAEEL|WormBase=WBGene00004461|UniProtKB=Q19324
          family PTHR10855
        NCBI gene 173807
        RefSeq protein NM_062434.6
        TREEFAM TREEFAM_ID TF105721
        TrEMBL UniProtAcc Q19324
        UniProt_GCRP UniProtAcc Q19324
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpn
    Allele (36)
    Strain: WBStrain00003178
    RNASeq_FPKM (74)
    GO_annotation: 00064355
      00064356
      00064357
      00064358
    Ortholog (45)
    Paralog: WBGene00000816 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, lid subcomplex. Is an ortholog of human PSMD12 (proteasome 26S subunit, non-ATPase 12). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F10G7.8
    Corresponding_transcript: F10G7.8.1
      F10G7.8.2
    Other_sequence: Tcir_isotig04496
      ACC20238_1
      HGC02492_1
      JI171040.1
      AS12898
      DAC00597_1
      CJC08053_1
      CRC03218_1
      Acan_isotig00871
      Hbac_isotig01398
      JI172362.1
      MIC07131_1
      AA294356.1
      ACC17198_1
      CN477759.1
      FD515300.1
      JO469031.1
      BXC04047_1
      HG01984
      GW412710.1
      CN477594.1
      BXC01486_1
      Dviv_isotig18493
      EX011716.1
      Acan_isotig00872
      FC818824.1
      SR03056
      JI469205.1
      CSC02069_1
      Acan_isotig00868
      PPC01142_1
      TCC01632_1
      FC540314.1
      Oden_isotig17672
      CRC11888_1
      MH00838
      CN477695.1
      CN477724.1
      Tcol_isotig11411
      CBC00783_1
      HBC00849_1
      CR00152
      MHC02218_1
      EX912963.1
      ACC03577_1
      TX00202
      JI462248.1
      ASC12328_1
      Tcol_isotig11410
      Name_isotig08968
      MI07935
      EX564015.1
      FM207770.1
      FC542913.1
      ES740340.1
      SRC01411_1
      PP02125
      MP00571
      Tcir_isotig21632
      BMC11386_1
      EX828060.1
      DA02988
      OVC00301_1
      Acan_isotig00869
      HC09011
      Tcir_isotig06867
      Acan_isotig00870
      GR977483.1
      Tcir_isotig04497
      SC00629
      MPC01404_1
      EX828331.1
      CR02098
      HG02574
      Acan_isotig00867
      PSC02808_1
      HCC12232_1
    Associated_feature: WBsf650009
      WBsf222942
      WBsf222943
  Experimental_info: RNAi_result (11)
    Expr_pattern: Chronogram2010
      Expr5728
      Expr1014181
      Expr1032264
      Expr1148259
      Expr2015492
      Expr2033727
    Drives_construct: WBCnstr00003654
      WBCnstr00035467
    Construct_product: WBCnstr00035467
    Microarray_results (20)
    Expression_cluster (157)
    Interaction (177)
  Map_info: Map: II Position: -3.61141 Error: 0.007674
    Positive: Positive_clone: F10G7 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029221
    WBPaper00030965
    WBPaper00038491
    WBPaper00055090
    WBPaper00056008
    WBPaper00056554
    WBPaper00061547
    WBPaper00061698
    WBPaper00063122
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene