WormBase Tree Display for Gene: WBGene00004459
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WBGene00004459 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C23G10 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rpn | ||||||
Allele (43) | |||||||
Strain | WBStrain00001248 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (15) | |||||||
Ortholog (47) | |||||||
Paralog | WBGene00004458 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | rpn-2 encodes a non-ATPase subunit of the 26S proteasome's 19S regulatory paritcle (RP) base subcomplex; RPN-2 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding and recognition of protein substrates and/or recycling of ubiquitin moieties during protein degradation; RPN-2 is expressed sporadically at all stages of development in the pharynx, intestine, body wall muscle, somatic gonad, neurons, and hypodermis. | Paper_evidence | WBPaper00004403 | |||
WBPaper00005553 | |||||||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enables protein kinase C binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in several cellular components, including cell cortex; mitotic spindle; and nuclear membrane. Expressed in intestine. Is an ortholog of human PSMD1 (proteasome 26S subunit, non-ATPase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C23G10.4a | |||||
C23G10.4b | |||||||
Corresponding_CDS_history | C23G10.4a:wp165 | ||||||
Corresponding_transcript | C23G10.4a.1 | ||||||
C23G10.4b.1 | |||||||
Other_sequence (83) | |||||||
Associated_feature | WBsf645250 | ||||||
WBsf645251 | |||||||
WBsf659035 | |||||||
WBsf225069 | |||||||
WBsf225070 | |||||||
Experimental_info | RNAi_result (63) | ||||||
Expr_pattern | Chronogram2025 | ||||||
Expr2103 | |||||||
Expr5315 | |||||||
Expr8131 | |||||||
Expr1024979 | |||||||
Expr1032262 | |||||||
Expr1145053 | |||||||
Expr2015490 | |||||||
Expr2033725 | |||||||
Drives_construct | WBCnstr00002141 | ||||||
WBCnstr00008740 | |||||||
WBCnstr00035469 | |||||||
Construct_product | WBCnstr00035469 | ||||||
Antibody | WBAntibody00001423 | ||||||
WBAntibody00001424 | |||||||
WBAntibody00001425 | |||||||
Microarray_results (38) | |||||||
Expression_cluster (160) | |||||||
Interaction (208) | |||||||
Map_info | Map | III | Position | -1.40919 | Error | 0.000212 | |
Positive | Positive_clone | C23G10 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |