WormBase Tree Display for Gene: WBGene00004458
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| WBGene00004458 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T22D1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-1 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | T22D1.9 | ||||||||
| Molecular_name | T22D1.9 | ||||||||
| T22D1.9.1 | |||||||||
| CE17253 | |||||||||
| Other_name | CELE_T22D1.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rpn-1 | ||||||||
| DB_info | Database | AceView | gene | 4H672 | |||||
| WormQTL | gene | WBGene00004458 | |||||||
| WormFlux | gene | WBGene00004458 | |||||||
| NDB | locus_tag | CELE_T22D1.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004458|UniProtKB=Q9GZH5 | |||||||
| family | PTHR10943 | ||||||||
| NCBI | gene | 177455 | |||||||
| RefSeq | protein | NM_068663.6 | |||||||
| TREEFAM | TREEFAM_ID | TF105739 | |||||||
| TrEMBL | UniProtAcc | Q9GZH5 | |||||||
| UniProt_GCRP | UniProtAcc | Q9GZH5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00036819 | ||||||||
| WBStrain00037504 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00004459 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpn-1 encodes a non-ATPase subunit of the 26S proteasome's 19S regulatory particle (RP) base subcomplex; rpn-1 activity is essential for embryonic, larval, and germline development; by homology, RPN-1 is predicted to function in unfolding and recognition of protein substrates and/or recycling of ubiquitin moieties during protein degradation. | Paper_evidence | WBPaper00005553 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00028730 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable enzyme regulator activity. Involved in nematode larval development and reproduction. Predicted to be located in nucleus and proteasome storage granule. Predicted to be part of proteasome regulatory particle, base subcomplex. Is an ortholog of human PSMD2 (proteasome 26S subunit ubiquitin receptor, non-ATPase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T22D1.9 | |||||||
| Corresponding_transcript | T22D1.9.1 | ||||||||
| Other_sequence (143) | |||||||||
| Associated_feature | WBsf651866 | ||||||||
| WBsf651867 | |||||||||
| WBsf667981 | |||||||||
| WBsf996850 | |||||||||
| WBsf230196 | |||||||||
| WBsf230197 | |||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Expr1017578 | ||||||||
| Expr1032261 | |||||||||
| Expr1157381 | |||||||||
| Expr2015489 | |||||||||
| Expr2033724 | |||||||||
| Drives_construct | WBCnstr00035470 | ||||||||
| Construct_product | WBCnstr00035470 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (159) | |||||||||
| Interaction (274) | |||||||||
| Map_info | Map | IV | Position | 3.2485 | Error | 0.000307 | |||
| Positive | Positive_clone | T22D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
