WormBase Tree Display for Gene: WBGene00004459
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| WBGene00004459 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C23G10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-2 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C23G10.4 | ||||||||
| Molecular_name | C23G10.4a | ||||||||
| C23G10.4a.1 | |||||||||
| CE40437 | |||||||||
| C23G10.4b | |||||||||
| CE31311 | |||||||||
| C23G10.4b.1 | |||||||||
| Other_name | CELE_C23G10.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpn-2 | ||||||||
| DB_info | Database | AceView | gene | 3H291 | |||||
| WormQTL | gene | WBGene00004459 | |||||||
| WormFlux | gene | WBGene00004459 | |||||||
| NDB | locus_tag | CELE_C23G10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004459|UniProtKB=Q18115 | |||||||
| family | PTHR10943 | ||||||||
| NCBI | gene | 175877 | |||||||
| RefSeq | protein | NM_065945.7 | |||||||
| NM_001392118.1 | |||||||||
| SwissProt | UniProtAcc | Q18115 | |||||||
| TREEFAM | TREEFAM_ID | TF105742 | |||||||
| UniProt_GCRP | UniProtAcc | Q18115 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00001248 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00004458 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpn-2 encodes a non-ATPase subunit of the 26S proteasome's 19S regulatory paritcle (RP) base subcomplex; RPN-2 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding and recognition of protein substrates and/or recycling of ubiquitin moieties during protein degradation; RPN-2 is expressed sporadically at all stages of development in the pharynx, intestine, body wall muscle, somatic gonad, neurons, and hypodermis. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005553 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables protein kinase C binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in several cellular components, including cell cortex; mitotic spindle; and nuclear membrane. Expressed in intestine. Is an ortholog of human PSMD1 (proteasome 26S subunit, non-ATPase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C23G10.4a | |||||||
| C23G10.4b | |||||||||
| Corresponding_CDS_history | C23G10.4a:wp165 | ||||||||
| Corresponding_transcript | C23G10.4a.1 | ||||||||
| C23G10.4b.1 | |||||||||
| Other_sequence (83) | |||||||||
| Associated_feature | WBsf645250 | ||||||||
| WBsf645251 | |||||||||
| WBsf659035 | |||||||||
| WBsf225069 | |||||||||
| WBsf225070 | |||||||||
| Experimental_info | RNAi_result (63) | ||||||||
| Expr_pattern | Chronogram2025 | ||||||||
| Expr2103 | |||||||||
| Expr5315 | |||||||||
| Expr8131 | |||||||||
| Expr1024979 | |||||||||
| Expr1032262 | |||||||||
| Expr1145053 | |||||||||
| Expr2015490 | |||||||||
| Expr2033725 | |||||||||
| Drives_construct | WBCnstr00002141 | ||||||||
| WBCnstr00008740 | |||||||||
| WBCnstr00035469 | |||||||||
| Construct_product | WBCnstr00035469 | ||||||||
| Antibody | WBAntibody00001423 | ||||||||
| WBAntibody00001424 | |||||||||
| WBAntibody00001425 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (160) | |||||||||
| Interaction (208) | |||||||||
| Map_info | Map | III | Position | -1.40919 | Error | 0.000212 | |||
| Positive | Positive_clone | C23G10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025088 | ||||||||
| WBPaper00029221 | |||||||||
| WBPaper00031906 | |||||||||
| WBPaper00032322 | |||||||||
| WBPaper00032980 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00048675 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056008 | |||||||||
| WBPaper00062237 | |||||||||
| WBPaper00063122 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
