WormBase Tree Display for Gene: WBGene00004459
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| WBGene00004459 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C23G10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpn-2 | Person_evidence | WBPerson1551 | |||||
| Sequence_name | C23G10.4 | ||||||||
| Molecular_name | C23G10.4a | ||||||||
| C23G10.4a.1 | |||||||||
| CE40437 | |||||||||
| C23G10.4b | |||||||||
| CE31311 | |||||||||
| C23G10.4b.1 | |||||||||
| Other_name | CELE_C23G10.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpn-2 | ||||||||
| DB_info | Database | AceView | gene | 3H291 | |||||
| WormQTL | gene | WBGene00004459 | |||||||
| WormFlux | gene | WBGene00004459 | |||||||
| NDB | locus_tag | CELE_C23G10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004459|UniProtKB=Q18115 | |||||||
| family | PTHR10943 | ||||||||
| NCBI | gene | 175877 | |||||||
| RefSeq | protein | NM_065945.7 | |||||||
| NM_001392118.1 | |||||||||
| SwissProt | UniProtAcc | Q18115 | |||||||
| TREEFAM | TREEFAM_ID | TF105742 | |||||||
| UniProt_GCRP | UniProtAcc | Q18115 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpn | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00001248 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00004458 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpn-2 encodes a non-ATPase subunit of the 26S proteasome's 19S regulatory paritcle (RP) base subcomplex; RPN-2 is required for embryonic, larval, and germline development and by homology, is predicted to function in unfolding and recognition of protein substrates and/or recycling of ubiquitin moieties during protein degradation; RPN-2 is expressed sporadically at all stages of development in the pharynx, intestine, body wall muscle, somatic gonad, neurons, and hypodermis. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005553 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables protein kinase C binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Located in several cellular components, including cell cortex; mitotic spindle; and nuclear membrane. Expressed in intestine. Is an ortholog of human PSMD1 (proteasome 26S subunit, non-ATPase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C23G10.4a | |||||||
| C23G10.4b | |||||||||
| Corresponding_CDS_history | C23G10.4a:wp165 | ||||||||
| Corresponding_transcript | C23G10.4a.1 | ||||||||
| C23G10.4b.1 | |||||||||
| Other_sequence | Oden_isotig01487 | ||||||||
| SR02694 | |||||||||
| HSC01519_1 | |||||||||
| SSC05780_1 | |||||||||
| HGC04224_1 | |||||||||
| Acan_isotig08216 | |||||||||
| CR09654 | |||||||||
| ASC18045_1 | |||||||||
| AS15763 | |||||||||
| MH00866 | |||||||||
| CBC07581_1 | |||||||||
| FC543041.1 | |||||||||
| Name_isotig02049 | |||||||||
| EX827940.1 | |||||||||
| CR02357 | |||||||||
| CGC01052_1 | |||||||||
| BXC01809_1 | |||||||||
| ACC30890_1 | |||||||||
| EV851363.1 | |||||||||
| MHC02293_1 | |||||||||
| EY473431.1 | |||||||||
| EX553970.1 | |||||||||
| CJC16400_1 | |||||||||
| PVC01501_1 | |||||||||
| EY459965.1 | |||||||||
| HG08929 | |||||||||
| CJC03756_1 | |||||||||
| CJC08620_1 | |||||||||
| EX556353.1 | |||||||||
| Dviv_isotig15912 | |||||||||
| FC546116.1 | |||||||||
| BMC01060_1 | |||||||||
| Tcol_isotig14045 | |||||||||
| EX547696.1 | |||||||||
| FC543157.1 | |||||||||
| ACC19292_1 | |||||||||
| CRC05534_1 | |||||||||
| JO468360.1 | |||||||||
| CBC05787_1 | |||||||||
| SS00211 | |||||||||
| DVC00419_1 | |||||||||
| AS16217 | |||||||||
| EX541032.1 | |||||||||
| CRC03413_1 | |||||||||
| Dviv_isotig15911 | |||||||||
| EX559690.1 | |||||||||
| Hbac_isotig04138 | |||||||||
| JI483520.1 | |||||||||
| WBC00595_1 | |||||||||
| FC553385.1 | |||||||||
| FC553618.1 | |||||||||
| ACC02970_1 | |||||||||
| EY464864.1 | |||||||||
| FC549405.1 | |||||||||
| JI165836.1 | |||||||||
| ES409154.1 | |||||||||
| HCC00509_1 | |||||||||
| JI480895.1 | |||||||||
| Tcir_isotig15457 | |||||||||
| HS01164 | |||||||||
| ES739822.1 | |||||||||
| Hbac_isotig02310 | |||||||||
| FC541922.1 | |||||||||
| EX554967.1 | |||||||||
| BUC01455_1 | |||||||||
| EX014132.1 | |||||||||
| EX915599.1 | |||||||||
| CR12480 | |||||||||
| CD374720.1 | |||||||||
| HBC04297_1 | |||||||||
| CJC09726_1 | |||||||||
| CV200805.1 | |||||||||
| CBC03078_1 | |||||||||
| Oden_isotig01486 | |||||||||
| CD455821.1 | |||||||||
| HC02845 | |||||||||
| CBC12258_1 | |||||||||
| CR12481 | |||||||||
| BXC03253_1 | |||||||||
| Oden_contig02698 | |||||||||
| Tcir_isotig14839 | |||||||||
| MH05920 | |||||||||
| Oden_isotig01488 | |||||||||
| Associated_feature | WBsf645250 | ||||||||
| WBsf645251 | |||||||||
| WBsf659035 | |||||||||
| WBsf225069 | |||||||||
| WBsf225070 | |||||||||
| Experimental_info | RNAi_result (63) | ||||||||
| Expr_pattern | Chronogram2025 | ||||||||
| Expr2103 | |||||||||
| Expr5315 | |||||||||
| Expr8131 | |||||||||
| Expr1024979 | |||||||||
| Expr1032262 | |||||||||
| Expr1145053 | |||||||||
| Expr2015490 | |||||||||
| Expr2033725 | |||||||||
| Drives_construct | WBCnstr00002141 | ||||||||
| WBCnstr00008740 | |||||||||
| WBCnstr00035469 | |||||||||
| Construct_product | WBCnstr00035469 | ||||||||
| Antibody | WBAntibody00001423 | ||||||||
| WBAntibody00001424 | |||||||||
| WBAntibody00001425 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (160) | |||||||||
| Interaction (208) | |||||||||
| Map_info | Map | III | Position | -1.40919 | Error | 0.000212 | |||
| Positive | Positive_clone | C23G10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
