WormBase Tree Display for Gene: WBGene00004420
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| WBGene00004420 | SMap | S_parent | Sequence | R13A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-9 | |||||||
| Sequence_name | R13A5.8 | ||||||||
| Molecular_name | R13A5.8 | ||||||||
| R13A5.8.1 | |||||||||
| CE01380 | |||||||||
| Other_name | CELE_R13A5.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | rpl-9 | ||||||||
| DB_info | Database | AceView | gene | 3I662 | |||||
| WormQTL | gene | WBGene00004420 | |||||||
| WormFlux | gene | WBGene00004420 | |||||||
| NDB | locus_tag | CELE_R13A5.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004420|UniProtKB=Q95Y90 | |||||||
| family | PTHR11655 | ||||||||
| NCBI | gene | 176071 | |||||||
| RefSeq | protein | NM_001382918.2 | |||||||
| SwissProt | UniProtAcc | Q95Y90 | |||||||
| TREEFAM | TREEFAM_ID | TF300033 | |||||||
| UniProt_GCRP | UniProtAcc | Q95Y90 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (11) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl9 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089791 | ||||||||
| 00089792 | |||||||||
| 00089793 | |||||||||
| 00089794 | |||||||||
| 00089795 | |||||||||
| 00089796 | |||||||||
| 00112820 | |||||||||
| 00112821 | |||||||||
| 00112822 | |||||||||
| 00112823 | |||||||||
| Ortholog (43) | |||||||||
| Structured_description | Concise_description | rpl-9 encodes a large ribosomal subunit L9 protein that affects fertility and embryonic viability. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Expressed in intestine and tail. Is an ortholog of human RPL9 (ribosomal protein L9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13A5.8 | |||||||
| Corresponding_transcript | R13A5.8.1 | ||||||||
| Other_sequence (362) | |||||||||
| Associated_feature | WBsf651215 | ||||||||
| WBsf667088 | |||||||||
| WBsf993044 | |||||||||
| WBsf1015254 | |||||||||
| WBsf227003 | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern | Expr6523 | ||||||||
| Expr1021042 | |||||||||
| Expr1032224 | |||||||||
| Expr1155551 | |||||||||
| Expr2015483 | |||||||||
| Expr2033718 | |||||||||
| Drives_construct | WBCnstr00002529 | ||||||||
| Construct_product | WBCnstr00041964 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (279) | |||||||||
| Map_info | Map | III | Position | -0.665571 | Error | 0.000431 | |||
| Positive | Positive_clone | R13A5 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029008 | ||||||||
| WBPaper00035149 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044760 | |||||||||
| WBPaper00046446 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00053133 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060235 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
