WormBase Tree Display for Gene: WBGene00004420

WBGene00004420 SMap: S_parent: Sequence: R13A5
  Identity: Version: 1
    Name: CGC_name: rpl-9
      Sequence_name: R13A5.8
      Molecular_name: R13A5.8
        R13A5.8.1
        CE01380
      Other_name: CELE_R13A5.8 Accession_evidence: NDB BX284603
      Public_name: rpl-9
    DB_info: Database: AceView gene 3I662
        WormQTL gene WBGene00004420
        WormFlux gene WBGene00004420
        NDB locus_tag CELE_R13A5.8
        Panther gene CAEEL|WormBase=WBGene00004420|UniProtKB=Q95Y90
          family PTHR11655
        NCBI gene 176071
        RefSeq protein NM_001382918.2
        SwissProt UniProtAcc Q95Y90
        TREEFAM TREEFAM_ID TF300033
        UniProt_GCRP UniProtAcc Q95Y90
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (11)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl9 using blastP
    RNASeq_FPKM (74)
    GO_annotation: 00089791
      00089792
      00089793
      00089794
      00089795
      00089796
      00112820
      00112821
      00112822
      00112823
    Ortholog: WBGene00030800 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00077376 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00118108 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00160033 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133097 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00225639 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4170 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3509 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4021 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18689 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22704 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g18775 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3326 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20840 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3535 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5910 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_15227.g24967 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rpl-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g6412 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19570 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00853.g16115 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07330 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008997 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08327 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g3470 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g7984 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30048200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8185 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245395 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00276336 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263248 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286074 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003115 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      SGD:S000005011 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      FB:FBgn0015756 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10369 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1298373 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3649210 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3642682 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:62049 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2322107 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2321003 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:9187595 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rpl-9 encodes a large ribosomal subunit L9 protein that affects fertility and embryonic viability. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson48
            WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Expressed in intestine and tail. Is an ortholog of human RPL9 (ribosomal protein L9). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R13A5.8
    Corresponding_transcript: R13A5.8.1
    Other_sequence (362)
    Associated_feature: WBsf651215
      WBsf667088
      WBsf993044
      WBsf1015254
      WBsf227003
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr6523
      Expr1021042
      Expr1032224
      Expr1155551
      Expr2015483
      Expr2033718
    Drives_construct: WBCnstr00002529
    Construct_product: WBCnstr00041964
    Microarray_results (19)
    Expression_cluster (163)
    Interaction (279)
  Map_info: Map: III Position: -0.665571 Error: 0.000431
    Positive: Positive_clone: R13A5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029008
    WBPaper00035149
    WBPaper00038491
    WBPaper00044760
    WBPaper00046446
    WBPaper00049828
    WBPaper00053133
    WBPaper00055090
    WBPaper00060235
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene