WormBase Tree Display for Gene: WBGene00004315
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| WBGene00004315 | SMap | S_parent | Sequence | T23F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rbd-1 | Person_evidence | WBPerson83 | |||||
| Sequence_name | T23F6.4 | ||||||||
| Molecular_name | T23F6.4a | ||||||||
| T23F6.4a.1 | |||||||||
| CE18963 | |||||||||
| T23F6.4b | |||||||||
| CE49797 | |||||||||
| T23F6.4b.1 | |||||||||
| Other_name | CELE_T23F6.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rbd-1 | ||||||||
| DB_info | Database | AceView | gene | 4N493 | |||||
| WormQTL | gene | WBGene00004315 | |||||||
| WormFlux | gene | WBGene00004315 | |||||||
| NDB | locus_tag | CELE_T23F6.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004315|UniProtKB=Q9XU67 | |||||||
| family | PTHR23147 | ||||||||
| NCBI | gene | 178229 | |||||||
| RefSeq | protein | NM_001306991.3 | |||||||
| NM_070031.6 | |||||||||
| TrEMBL | UniProtAcc | Q9XU67 | |||||||
| A0A061AJ27 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XU67 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rbd | ||||||||
| Allele (73) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (37) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | rbd-1 encodes an ortholog of S. cerevisiae Mrd1p; RBD-1 is required for processing of 18S rRNA and subsequent formation of the 40S ribosomal subunit, and is essential for normal development; in addition, RBD-1 may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, RBD-1's role in ribosome biogenesis suggests a link between biogenesis in the distal sheath and control of cell division in the germ line; RBD-1 localizes to the nucleolus. | Paper_evidence | WBPaper00006468 | |||||
| WBPaper00028280 | |||||||||
| WBPaper00028942 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 30 Sep 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Involved in several processes, including collagen and cuticulin-based cuticle development; positive regulation of growth rate; and vulval development. Located in nucleolus. Is an ortholog of human RBM19 (RNA binding motif protein 19). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T23F6.4a | |||||||
| T23F6.4b | |||||||||
| Corresponding_transcript | T23F6.4a.1 | ||||||||
| T23F6.4b.1 | |||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf646483 | ||||||||
| WBsf646484 | |||||||||
| WBsf660832 | |||||||||
| WBsf660833 | |||||||||
| WBsf998203 | |||||||||
| WBsf1018414 | |||||||||
| WBsf1018415 | |||||||||
| WBsf229318 | |||||||||
| WBsf229319 | |||||||||
| WBsf229320 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00026380 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063100 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007226 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053959 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110904 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062052 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065762 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063099 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2904 | ||||||||
| Expr2905 | |||||||||
| Expr2906 | |||||||||
| Expr1025021 | |||||||||
| Expr1032140 | |||||||||
| Expr1157504 | |||||||||
| Expr2015266 | |||||||||
| Expr2033500 | |||||||||
| Drives_construct | WBCnstr00011017 | ||||||||
| WBCnstr00035569 | |||||||||
| Construct_product | WBCnstr00035569 | ||||||||
| Antibody | WBAntibody00000728 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (135) | |||||||||
| WBProcess | WBbiopr:00000096 | ||||||||
| Map_info | Map | IV | Position | 6.14604 | Error | 0.004844 | |||
| Positive | Positive_clone | T23F6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005532 | ||||||||
| WBPaper00006468 | |||||||||
| WBPaper00028280 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040903 | |||||||||
| WBPaper00044821 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064080 | |||||||||
| WBPaper00065012 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
