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WormBase Tree Display for Gene: WBGene00004306

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Name Class

WBGene00004306SMapS_parentSequenceR12C12
IdentityVersion1
NameCGC_nameran-5
Sequence_nameR12C12.2
Molecular_nameR12C12.2
R12C12.2.1
CE02847
Other_nameCELE_R12C12.2Accession_evidenceNDBBX284602
Public_nameran-5
DB_infoDatabaseAceViewgene2G339
WormQTLgeneWBGene00004306
WormFluxgeneWBGene00004306
NDBlocus_tagCELE_R12C12.2
PanthergeneCAEEL|WormBase=WBGene00004306|UniProtKB=Q21961
familyPTHR23138
NCBIgene174011
RefSeqproteinNM_062807.9
TREEFAMTREEFAM_IDTF313181
TrEMBLUniProtAccQ21961
UniProt_GCRPUniProtAccQ21961
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:34WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classran
Allele (23)
StrainWBStrain00051355
RNASeq_FPKM (74)
GO_annotation00073506
00073507
00073508
00112639
OrthologWBGene00054002Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025597Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00139301Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00156095Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00110881Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00131472Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00225624Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6497Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5317Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11037Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1404Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12482Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14023Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16455Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9347Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9354Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g8621Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00094.g4171Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ran-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g16432Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00318.g9301Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04462Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_006171Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09224Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18667Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20123600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g4673Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247022Onchocerca volvulusFrom_analysisWormBase-Compara
SGD:S000001325Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoFinder
PhylomeDB
FB:FBgn0039110Drosophila melanogasterFrom_analysisInparanoid
OrthoFinder
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-040426-1627Danio rerioFrom_analysisInparanoid
OrthoFinder
OrthoInspector
ZFIN:ZDB-GENE-040426-1132Danio rerioFrom_analysisInparanoid
OrthoFinder
OrthoInspector
HGNC:9850Homo sapiensFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
MGI:1919060Mus musculusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
MGI:2444654Mus musculusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1307559Rattus norvegicusFrom_analysisOrthoFinder
OrthoInspector
PhylomeDB
RGD:1589604Rattus norvegicusFrom_analysisInparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ParalogWBGene00003795Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003802Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionran-5 encodes a protein containing a RanBP1 domain, domains which are predicted to interact with Ran proteins to inhibit dissociation of GTP and to stimulate GAP-mediated GTP hydrolysis by Ran, that affects body morphology, locomotion, and embryonic viability.Paper_evidenceWBPaper00006395
Curator_confirmedWBPerson48
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to contribute to GTPase activator activity. Predicted to be involved in intracellular transport. Predicted to be located in cytoplasm. Predicted to be part of nuclear pore. Is an ortholog of human RANBP3 (RAN binding protein 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR12C12.2
Corresponding_transcriptR12C12.2.1
Other_sequenceCSC00655_1
FD516002.1
CJC00757_1
CRC03720_1
CR01266
CBC12363_1
Associated_featureWBsf644251
WBsf988050
WBsf221385
WBsf221386
Experimental_infoRNAi_resultWBRNAi00073238Inferred_automaticallyRNAi_primary
WBRNAi00073239Inferred_automaticallyRNAi_primary
WBRNAi00061534Inferred_automaticallyRNAi_primary
WBRNAi00034882Inferred_automaticallyRNAi_primary
WBRNAi00017791Inferred_automaticallyRNAi_primary
WBRNAi00027441Inferred_automaticallyRNAi_primary
WBRNAi00051836Inferred_automaticallyRNAi_primary
WBRNAi00026097Inferred_automaticallyRNAi_primary
WBRNAi00061049Inferred_automaticallyRNAi_primary
Expr_patternExpr1015648
Expr1032131
Expr1155497
Expr2015254
Expr2033488
Drives_constructWBCnstr00035576
Construct_productWBCnstr00035576
Microarray_results (22)
Expression_cluster (93)
Interaction (55)
Map_infoMapIIPosition-0.599869Error0.011187
PositivePositive_cloneR12C12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00026736
WBPaper00038491
WBPaper00055090
RemarkSequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene