WormBase Tree Display for Gene: WBGene00004256
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| WBGene00004256 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK994 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | pxn-1 | Person_evidence | WBPerson345 | |||||
| Sequence_name | ZK994.3 | ||||||||
| Molecular_name | ZK994.3 | ||||||||
| ZK994.3.1 | |||||||||
| CE40298 | |||||||||
| Other_name | CELE_ZK994.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | pxn-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 26 May 2006 16:35:34 | WBPerson1849 | Event | Acquires_merge | WBGene00022841 | ||||
| Acquires_merge | WBGene00022841 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pxn | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00031626 | ||||||||
| WBStrain00050780 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (55) | |||||||||
| Paralog | WBGene00004257 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009897 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022743 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017968 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019970 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008627 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019613 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016700 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011530 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable peroxidase activity. Involved in muscle attachment and positive regulation of axon guidance. Located in basement membrane. Expressed in several structures, including egg-laying apparatus; excretory cell; intestine; somatic nervous system; and spermathecal-uterine valve cell. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease 1; asthma (multiple); kidney failure (multiple); and lung disease (multiple). Is an ortholog of human PXDN (peroxidasin) and PXDNL (peroxidasin like). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (21) | ||||||||
| Molecular_info | Corresponding_CDS | ZK994.3 | |||||||
| Corresponding_CDS_history | ZK994.3:wp112 | ||||||||
| ZK994.3:wp159 | |||||||||
| Corresponding_transcript | ZK994.3.1 | ||||||||
| Other_sequence (12) | |||||||||
| Associated_feature (18) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00059883 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022255 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038524 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022256 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038525 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059882 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12146 | ||||||||
| Expr12147 | |||||||||
| Expr1018057 | |||||||||
| Expr1032099 | |||||||||
| Expr1163304 | |||||||||
| Expr2015200 | |||||||||
| Expr2033434 | |||||||||
| Drives_construct | WBCnstr00020277 | ||||||||
| WBCnstr00020279 | |||||||||
| WBCnstr00035607 | |||||||||
| Construct_product | WBCnstr00020279 | ||||||||
| WBCnstr00035607 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (163) | |||||||||
| Interaction (49) | |||||||||
| Map_info | Map | V | Position | 1.43195 | Error | 0.002031 | |||
| Positive | Positive_clone | ZK994 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4596 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027214 | ||||||||
| WBPaper00033518 | |||||||||
| WBPaper00037647 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041570 | |||||||||
| WBPaper00043642 | |||||||||
| WBPaper00046086 | |||||||||
| WBPaper00047130 | |||||||||
| WBPaper00047921 | |||||||||
| WBPaper00047922 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
