WormBase Tree Display for Gene: WBGene00004256
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WBGene00004256 | Evidence | Person_evidence | WBPerson345 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK994 | ||||
Identity | Version | 2 | |||||
Name | CGC_name | pxn-1 | Person_evidence | WBPerson345 | |||
Sequence_name | ZK994.3 | ||||||
Molecular_name | ZK994.3 | ||||||
ZK994.3.1 | |||||||
CE40298 | |||||||
Other_name | CELE_ZK994.3 | Accession_evidence | NDB | BX284605 | |||
Public_name | pxn-1 | ||||||
DB_info | Database (12) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Acquires_merge | WBGene00022841 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pxn | ||||||
Allele (85) | |||||||
Strain | WBStrain00031626 | ||||||
WBStrain00050780 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (19) | |||||||
Ortholog (55) | |||||||
Paralog | WBGene00004257 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00009897 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00022743 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015841 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00017968 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019970 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00008627 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00019613 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016700 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00011530 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable peroxidase activity. Involved in muscle attachment and positive regulation of axon guidance. Located in basement membrane. Expressed in several structures, including egg-laying apparatus; excretory cell; intestine; somatic nervous system; and spermathecal-uterine valve cell. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease 1; asthma (multiple); kidney failure (multiple); and lung disease (multiple). Is an ortholog of human PXDN (peroxidasin) and PXDNL (peroxidasin like). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model (21) | ||||||
Molecular_info | Corresponding_CDS | ZK994.3 | |||||
Corresponding_CDS_history | ZK994.3:wp112 | ||||||
ZK994.3:wp159 | |||||||
Corresponding_transcript | ZK994.3.1 | ||||||
Other_sequence (12) | |||||||
Associated_feature (18) | |||||||
Experimental_info | RNAi_result | WBRNAi00059883 | Inferred_automatically | RNAi_primary | |||
WBRNAi00022255 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038524 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022256 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038525 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059882 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12146 | ||||||
Expr12147 | |||||||
Expr1018057 | |||||||
Expr1032099 | |||||||
Expr1163304 | |||||||
Expr2015200 | |||||||
Expr2033434 | |||||||
Drives_construct | WBCnstr00020277 | ||||||
WBCnstr00020279 | |||||||
WBCnstr00035607 | |||||||
Construct_product | WBCnstr00020279 | ||||||
WBCnstr00035607 | |||||||
Microarray_results (24) | |||||||
Expression_cluster (163) | |||||||
Interaction (49) | |||||||
Map_info | Map | V | Position | 1.43195 | Error | 0.002031 | |
Positive | Positive_clone | ZK994 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4596 | |||||
Pseudo_map_position | |||||||
Reference (11) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |