WormBase Tree Display for Gene: WBGene00004204
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| WBGene00004204 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swsn-4 | Person_evidence | WBPerson552 | |||||
| WBPerson407 | |||||||||
| Sequence_name | F01G4.1 | ||||||||
| Molecular_name | F01G4.1 | ||||||||
| F01G4.1.1 | |||||||||
| CE05553 | |||||||||
| Other_name | psa-4 | Person_evidence | WBPerson552 | ||||||
| CELE_F01G4.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | swsn-4 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 11 Feb 2011 15:17:24 | WBPerson2970 | Name_change | CGC_name | swsn-4 | ||||
| Other_name | psa-4 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00001167 | ||||||||
| WBStrain00001676 | |||||||||
| WBStrain00001677 | |||||||||
| WBStrain00031323 | |||||||||
| WBStrain00008467 | |||||||||
| WBStrain00048602 | |||||||||
| WBStrain00054726 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP4412 | ||||||||
| Ortholog (67) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | swsn-4 (phasmid socket absent) gene encodes an ortholog of SWI2/SNF2, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; swsn-4 is probably required during mitosis of the T cells for asymmetric cell division. | Paper_evidence | WBPaper00004350 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 01 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP-dependent activity, acting on DNA and DNA binding activity. Involved in gonad development. Predicted to be located in nucleus. Expressed in several structures, including head; hyp7 syncytium; tail; ventral cord neurons; and vulval cell. Used to study alcohol use disorder and cancer. Human ortholog(s) of this gene implicated in several diseases, including Coffin-Siris syndrome 4; carcinoma (multiple); and rhabdoid cancer. Is an ortholog of human SMARCA2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2) and SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:162 | Homo sapiens | Paper_evidence | WBPaper00060275 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 Jul 2022 00:00:00 | ||||||||
| DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | DOID:0070046 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11100) | |||||
| DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11100) | ||||||
| DOID:10283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11098,HGNC:11100) | ||||||
| DOID:3672 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11100) | ||||||
| DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11100) | ||||||
| Models_disease_in_annotation | WBDOannot00001297 | ||||||||
| Models_disease_asserted | WBDOannot00000663 | ||||||||
| Molecular_info | Corresponding_CDS | F01G4.1 | |||||||
| Corresponding_transcript | F01G4.1.1 | ||||||||
| Other_sequence (109) | |||||||||
| Associated_feature (14) | |||||||||
| Transcription_factor | WBTranscriptionFactor000378 | ||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00002059 | ||||||||
| WBCnstr00004205 | |||||||||
| WBCnstr00009748 | |||||||||
| WBCnstr00010070 | |||||||||
| WBCnstr00037928 | |||||||||
| WBCnstr00038385 | |||||||||
| Construct_product | WBCnstr00010070 | ||||||||
| WBCnstr00037928 | |||||||||
| WBCnstr00038385 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (199) | |||||||||
| Interaction (369) | |||||||||
| Map_info | Map | IV | Position | 4.90728 | Error | 0.003105 | |||
| Positive | Positive_clone | F01G4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4526 | |||||||
| 4609 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Sequence connection from [Goldstein B], [020620 krb] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
